View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_62 (Length: 275)
Name: NF2371_low_62
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 2 - 259
Target Start/End: Original strand, 37665217 - 37665482
Alignment:
| Q |
2 |
gggtgtattagatgattaatctata----attataagtgtagttagttacattagtttgttttaaactttgatagttacttactaaataacttgcactcc |
97 |
Q |
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| T |
37665217 |
gggtgtattagatgattaatctatatataattataagtgtagttagttacattagtttgttttaaacttcgatagttacttactaaataacttgcactcc |
37665316 |
T |
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| Q |
98 |
aagttatgtgtatataagtagttgtattgttctannnnnnnn----attaaggtaccaatattaacaccgatattatcttatgggacaaaaaagttaatt |
193 |
Q |
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| T |
37665317 |
aagttatgtgtatataagtagttatattgttctatttttttattttattaaggtaccaatattaacaccgatattatcttatgggacaaaaaagttaatt |
37665416 |
T |
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| Q |
194 |
aacacaagaagataatattaacatgatcatgggaaaatgatcatgcatgtcccatcaccttgaagt |
259 |
Q |
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| T |
37665417 |
aacacaagaagataatattaacatgatcatgggaaaatgatcatgtatgtcccatcaccttgaagt |
37665482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 31129285 - 31129162
Alignment:
| Q |
7 |
tattagatgattaatctataattataagtgtagttagttacattagtttgttttaaactttgatagttacttactaaataacttgcactccaagttatgt |
106 |
Q |
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| T |
31129285 |
tattagatgagtaatccatagtcataaatgtagttagttacattagtttgctt-aaactttgctagttagttacctaataccttactctacaagttatgt |
31129187 |
T |
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| Q |
107 |
gtatataagtagttgtattgttcta |
131 |
Q |
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| T |
31129186 |
gtatatagatagttgtattgttcta |
31129162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 31759922 - 31759865
Alignment:
| Q |
65 |
tttgatagttacttactaaataacttgcactccaagttatgtgtatataagtagttgt |
122 |
Q |
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| T |
31759922 |
tttgttagttatttactaaatgacttgcactacaagttatgtgtatataaatagttgt |
31759865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 36019834 - 36019948
Alignment:
| Q |
7 |
tattagatgattaatctataattataagtgtagttagttacattagtttgtttta------aactttgatagttactta-ctaaataacttgcactccaa |
99 |
Q |
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| T |
36019834 |
tattagatgattaatctataatcataggagaagttaattacattagttggttttacttaaaaagtttgttagttagtcaacctaataacttgcactccaa |
36019933 |
T |
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| Q |
100 |
gttatgtgtatataa |
114 |
Q |
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| T |
36019934 |
gttatgtgtatataa |
36019948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 34741493 - 34741438
Alignment:
| Q |
6 |
gtattagatgattaatctataattataagtgtagttagttacattagtttgtttta |
61 |
Q |
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||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||| |
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| T |
34741493 |
gtattagatgattaatccataatcataagaaaagttagttacattagttggtttta |
34741438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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