View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_low_63 (Length: 273)

Name: NF2371_low_63
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_low_63
NF2371_low_63
[»] chr2 (6 HSPs)
chr2 (164-256)||(15773559-15773653)
chr2 (56-93)||(44904601-44904638)
chr2 (56-92)||(16288923-16288959)
chr2 (42-93)||(28167269-28167319)
chr2 (116-154)||(28165666-28165704)
chr2 (56-90)||(28165732-28165766)
[»] chr8 (2 HSPs)
chr8 (56-93)||(45447076-45447113)
chr8 (54-93)||(25562735-25562774)
[»] chr1 (1 HSPs)
chr1 (56-93)||(46605874-46605911)
[»] chr4 (1 HSPs)
chr4 (58-93)||(34538196-34538231)
[»] chr3 (4 HSPs)
chr3 (42-93)||(3149332-3149382)
chr3 (40-93)||(27661165-27661217)
chr3 (56-93)||(33551653-33551690)
chr3 (56-84)||(3149972-3150000)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 15773653 - 15773559
Alignment:
Q  164 ccaaagcaaaatagattctattgatcaaactagtagaaagg--aaaatttacaacttaattacaacatggaatccttctcatgatgtagcatatg 256  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  15773653 ccaaagcaaaatagattctattgatcaaactagtagaaaggtaaaaatttacaacttcattacaacatgcaatccttctcatgatgtagcatatg 15773559  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 44904638 - 44904601
Alignment:
Q  56 aatttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  44904638 aatttcaaaaagttaagaaaatacaagggttgtttcgc 44904601  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 16288923 - 16288959
Alignment:
Q  56 aatttcaaaaagttaagaaaatacaagggctgtttcg 92  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16288923 aatttcaaaaagttaagaaaatacaagggttgtttcg 16288959  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 28167269 - 28167319
Alignment:
Q  42 gacggcagagaccaaatttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    ||||||||||||||| |||||||| |||||| ||||||||||| ||||||||    
T  28167269 gacggcagagaccaa-tttcaaaaggttaagtaaatacaagggttgtttcgc 28167319  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 28165704 - 28165666
Alignment:
Q  116 aaaccaaaaacccgctaacttacatagaccttttacata 154  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  28165704 aaaccaaaaacgcgctaacttacatggaccttttacata 28165666  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 28165766 - 28165732
Alignment:
Q  56 aatttcaaaaagttaagaaaatacaagggctgttt 90  Q
    ||||||||||||||||||||||||||||| |||||    
T  28165766 aatttcaaaaagttaagaaaatacaagggttgttt 28165732  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 45447113 - 45447076
Alignment:
Q  56 aatttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  45447113 aatttcaaaaagttaagaaaatacaagggttgtttcgc 45447076  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 25562735 - 25562774
Alignment:
Q  54 caaatttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    ||||||| ||||||||||||||||||||||| ||||||||    
T  25562735 caaatttaaaaaagttaagaaaatacaagggttgtttcgc 25562774  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 46605874 - 46605911
Alignment:
Q  56 aatttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  46605874 aatttcaaaaagttaagaaaatacaagggttgtttcgc 46605911  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 34538231 - 34538196
Alignment:
Q  58 tttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    ||||||||||||||||||||||||||| ||||||||    
T  34538231 tttcaaaaagttaagaaaatacaagggttgtttcgc 34538196  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 3149382 - 3149332
Alignment:
Q  42 gacggcagagaccaaatttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    ||||||||||||||| |||||||| |||||| ||||||||||| ||||||||    
T  3149382 gacggcagagaccaa-tttcaaaaggttaagtaaatacaagggttgtttcgc 3149332  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 27661217 - 27661165
Alignment:
Q  40 ctgacggcagagaccaaatttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    ||||||||||||||||| ||||||||| ||||| |||||||| || ||||||||    
T  27661217 ctgacggcagagaccaa-tttcaaaaaattaagtaaatacaaaggttgtttcgc 27661165  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 33551690 - 33551653
Alignment:
Q  56 aatttcaaaaagttaagaaaatacaagggctgtttcgc 93  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  33551690 aattccaaaaagttaagaagatacaagggctgtttcgc 33551653  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 84
Target Start/End: Original strand, 3149972 - 3150000
Alignment:
Q  56 aatttcaaaaagttaagaaaatacaaggg 84  Q
    |||||||||||||||||||||||||||||    
T  3149972 aatttcaaaaagttaagaaaatacaaggg 3150000  T

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