View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_low_64 (Length: 270)

Name: NF2371_low_64
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_low_64
NF2371_low_64
[»] chr5 (2 HSPs)
chr5 (13-255)||(27657958-27658200)
chr5 (13-255)||(4883670-4883912)
[»] chr4 (2 HSPs)
chr4 (13-255)||(22114327-22114569)
chr4 (13-114)||(38719618-38719719)
[»] chr7 (1 HSPs)
chr7 (13-255)||(45725752-45725994)
[»] chr8 (2 HSPs)
chr8 (13-255)||(27972597-27972840)
chr8 (13-255)||(28029866-28030109)
[»] chr3 (2 HSPs)
chr3 (173-255)||(22601480-22601562)
chr3 (82-133)||(22601385-22601436)
[»] chr2 (1 HSPs)
chr2 (179-244)||(36965836-36965901)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 27657958 - 27658200
Alignment:
Q  13 ttacaattgtacttatgattctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27657958 ttacaattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 27658057  T
Q  113 gggtaaatccctaaaattacagaaagggaacgaatttgggnnnnnnnnnnnnnnnnnnnnttagggttcaattacctttggaaatgggcatgagaaaaat 212  Q
    ||||||||||||||||||||||||||||| ||||||||||                    ||||||||||||||||||||||||||||||||||||||||    
T  27658058 gggtaaatccctaaaattacagaaagggagcgaatttgggaaaaaatggaaaaactaaaattagggttcaattacctttggaaatgggcatgagaaaaat 27658157  T
Q  213 tctctaccaaaattatattcagttccagcaaccctaaccacag 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27658158 tctctaccaaaattatattcagttccagcaaccctaaccacag 27658200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 4883912 - 4883670
Alignment:
Q  13 ttacaattgtacttatgattctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4883912 ttacaattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatataaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 4883813  T
Q  113 gggtaaatccctaaaattacagaaagggaacgaatttgggnnnnnnnnnnnnnnnnnnnnttagggttcaattacctttggaaatgggcatgagaaaaat 212  Q
    || ||||||||||||||||||||||||||||||| |||||                    ||||||||||||||||||||||||||||||||||||||||    
T  4883812 ggataaatccctaaaattacagaaagggaacgaaattgggaaaaaatggaaaaactaaaattagggttcaattacctttggaaatgggcatgagaaaaat 4883713  T
Q  213 tctctaccaaaattatattcagttccagcaaccctaaccacag 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4883712 tctctaccaaaattatattcagttccagcaaccctaaccacag 4883670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 13 - 255
Target Start/End: Original strand, 22114327 - 22114569
Alignment:
Q  13 ttacaattgtacttatgattctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22114327 ttacaattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 22114426  T
Q  113 gggtaaatccctaaaattacagaaagggaacgaatttgggnnnnnnnnnnnnnnnnnnnnttagggttcaattacctttggaaatgggcatgagaaaaat 212  Q
    ||||||||||||||||||||||||| ||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||    
T  22114427 gggtaaatccctaaaattacagaaatggaacgaatttgggaaaaaatggaaaaactaaaattagggttcaattacctttggaaatgggcatgagaaaaat 22114526  T
Q  213 tctctaccaaaattatattcagttccagcaaccctaaccacag 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22114527 tctctaccaaaattatattcagttccagcaaccctaaccacag 22114569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 38719618 - 38719719
Alignment:
Q  13 ttacaattgtacttatgattctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38719618 ttacaattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 38719717  T
Q  113 gg 114  Q
    ||    
T  38719718 gg 38719719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 45725994 - 45725752
Alignment:
Q  13 ttacaattgtacttatgattctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45725994 ttacaattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 45725895  T
Q  113 gggtaaatccctaaaattacagaaagggaacgaatttgggnnnnnnnnnnnnnnnnnnnnttagggttcaattacctttggaaatgggcatgagaaaaat 212  Q
    ||||||||||||||||||| ||||| ||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||    
T  45725894 gggtaaatccctaaaattatagaaatggaacgaatttgggaaaaaatggaaaaactaaaattagggttcaattacctttggaaatgggcatgagaaaaat 45725795  T
Q  213 tctctaccaaaattatattcagttccagcaaccctaaccacag 255  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45725794 tctctaccaaaattatattcagttccagcaaccctaaccacag 45725752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 27972840 - 27972597
Alignment:
Q  13 ttacaattgtacttatgattctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27972840 ttacaattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 27972741  T
Q  113 gggtaaatccctaaaattacagaaagggaacgaatttggg-nnnnnnnnnnnnnnnnnnnnttagggttcaattacctttggaaatgggcatgagaaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||                     ||| |||||||||||||||||||||||||||||||||||    
T  27972740 gggtaaatccctaaaattacagaaagggaacgaatttgggaaaaaaatggaaaaactaaaattaaggttcaattacctttggaaatgggcatgagaaaaa 27972641  T
Q  212 ttctctaccaaaattatattcagttccagcaaccctaaccacag 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27972640 ttctctaccaaaattatattcagttccagcaaccctaaccacag 27972597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 28030109 - 28029866
Alignment:
Q  13 ttacaattgtacttatgattctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28030109 ttacaattgtacttatgatcctaaaaatcaaaatcaaagttacccaacatatcaaaattaaccaacaacttaataaacctcaaatttgggtataataatg 28030010  T
Q  113 gggtaaatccctaaaattacagaaagggaacgaatttggg-nnnnnnnnnnnnnnnnnnnnttagggttcaattacctttggaaatgggcatgagaaaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||                     ||| |||||||||||||||||||||||||||||||||||    
T  28030009 gggtaaatccctaaaattacagaaagggaacgaatttgggaaaaaaatggaaaaactaaaattaaggttcaattacctttggaaatgggcatgagaaaaa 28029910  T
Q  212 ttctctaccaaaattatattcagttccagcaaccctaaccacag 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  28029909 ttctctaccaaaattatattcagttccagcaaccctaaccacag 28029866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 255
Target Start/End: Original strand, 22601480 - 22601562
Alignment:
Q  173 ttagggttcaattacctttggaaatgggcatgagaaaaattctctaccaaaattatattcagttccagcaaccctaaccacag 255  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||| |||| || ||||| |||||||||| ||||| ||||    
T  22601480 ttaggattcaattacctttgaaaatgggcatgagaaaaattctctacgaaaaatagattcaattccagcaactctaacaacag 22601562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 22601385 - 22601436
Alignment:
Q  82 ttaataaacctcaaatttgggtataataatggggtaaatccctaaaattaca 133  Q
    |||||||| |||||| | ||||||||||| ||||||||||| ||||||||||    
T  22601385 ttaataaatctcaaaatagggtataataagggggtaaatccttaaaattaca 22601436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 36965836 - 36965901
Alignment:
Q  179 ttcaattacctttggaaatgggcatgagaaaaattctctaccaaaattatattcagttccagcaac 244  Q
    |||||||||||||| ||||||| |||||||||| |||| |||||||||| ||| ||||| ||||||    
T  36965836 ttcaattacctttgaaaatgggaatgagaaaaactctcaaccaaaattagatttagttctagcaac 36965901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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