View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_low_65 (Length: 268)
Name: NF2371_low_65
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 6868591 - 6868729
Alignment:
| Q |
1 |
aatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgttttggcataaaaatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6868591 |
aatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgttttggc-taaaaatgg |
6868689 |
T |
|
| Q |
101 |
ctctgaggaaaagaatcaaatcaaataaaataacatacct |
140 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6868690 |
ctctgaggaaaagaatcaaatcaaatcaaataacatacct |
6868729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 6868728 - 6868808
Alignment:
| Q |
181 |
ctccagaacctgttgttattgttaacgcactaaagattgaatcttcactattgggtaagcaatatattcgattttcatctc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6868728 |
ctccagaacctgttgttattgttaacgcactaaagattgaatcttcactattgggtaagcaatatattcgattttgatctc |
6868808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 47150072 - 47149928
Alignment:
| Q |
108 |
gaaaagaatcaaatcaaataaaataacatacctgagctagaaacgttggtggttccagatgaataagctatttctccagaacctgttgttattgttaacg |
207 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||| ||||||| | |
|
|
| T |
47150072 |
gaaatgaatcaaatcaaagaaaataacatacctgagctagaaacgttagtgtttccagatgaagaagctatttctccagaacccattg---ttgttaatg |
47149976 |
T |
|
| Q |
208 |
cactaaagattgaatcttcactattgggtaagcaatatattcgatttt |
255 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
47149975 |
cactaaaaattgaatctttactattggataagcaatatcttcgatttt |
47149928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14080108 - 14080018
Alignment:
| Q |
1 |
aatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgttttggcataaaaatgg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
14080108 |
aatggttgtgtataagttcaaccctt---atcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgttttggcatcaaaatgg |
14080020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14390136 - 14390046
Alignment:
| Q |
1 |
aatggttgtgtataagttcagcccttcttatcgtgtcgtgtgtgtcacacaagtacgtattagtttgtgtggggacccacccgttttggcataaaaatgg |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
14390136 |
aatggttgtgtataagttcaaccctt---atcatgtcgtgtgtgtcacac----acgtactagtttgtgtgggg----acccgttttggcatcaaaatgg |
14390048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University