View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_66 (Length: 267)
Name: NF2371_low_66
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 38775196 - 38774961
Alignment:
| Q |
17 |
aagaattattatcaaagtgtgacactcacgtgtttcacaataagataatgagtgttagagattgtgctaaaaagagagtgtcaatatcactcgataaaca |
116 |
Q |
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| T |
38775196 |
aagaattattatcaaagtgtgacactcacgtgtttcacaataagataatgaatgttagagattgtgctaaaaagagagtgtcaatatcactcgataaaca |
38775097 |
T |
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| Q |
117 |
atcttcgctacggatgcttgttcaaaatgaaaaattgcaattgagacacaaatgttccttcacattccatgatttgagctacaactttttgctaccacca |
216 |
Q |
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| T |
38775096 |
atcttcgttacggatgcttgttcaaaatgaaaaattgcaattgagacacaaatgttccttcacattccatgatttgagctacaactttttgctaccacca |
38774997 |
T |
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| Q |
217 |
accatccacttgcactccagcctctcctcttttcat |
252 |
Q |
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| T |
38774996 |
accatccacttccactccagcctctcctcttttcat |
38774961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 15884557 - 15884597
Alignment:
| Q |
54 |
caataagataatgagtgttagagattgtgctaaaaagagag |
94 |
Q |
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| T |
15884557 |
caataagataatgagtattagagattgtggtcaaaagagag |
15884597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 19190684 - 19190640
Alignment:
| Q |
54 |
caataagataatgagtgttagagattgtgctaaaaagagagtgtc |
98 |
Q |
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| T |
19190684 |
caataagaaaatgagtgttagagagagtgcttaaaagagagtgtc |
19190640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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