View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_low_68 (Length: 263)

Name: NF2371_low_68
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_low_68
NF2371_low_68
[»] chr7 (23 HSPs)
chr7 (121-255)||(18947314-18947448)
chr7 (1-67)||(21151069-21151135)
chr7 (1-55)||(7362497-7362551)
chr7 (1-58)||(45260519-45260576)
chr7 (11-67)||(12139245-12139301)
chr7 (1-65)||(47226166-47226229)
chr7 (1-64)||(16366438-16366501)
chr7 (1-59)||(4888392-4888450)
chr7 (1-59)||(18198181-18198239)
chr7 (1-59)||(25084820-25084878)
chr7 (1-59)||(44647890-44647945)
chr7 (1-56)||(9559146-9559201)
chr7 (124-189)||(18948226-18948291)
chr7 (1-59)||(29630973-29631031)
chr7 (5-59)||(32915884-32915938)
chr7 (7-60)||(34986043-34986096)
chr7 (5-65)||(32916098-32916158)
chr7 (1-65)||(6882150-6882214)
chr7 (5-60)||(47500379-47500434)
chr7 (1-59)||(19889116-19889174)
chr7 (3-56)||(36726331-36726384)
chr7 (117-189)||(35752350-35752421)
chr7 (7-59)||(47271205-47271257)
[»] chr1 (15 HSPs)
chr1 (1-70)||(45977936-45978005)
chr1 (1-67)||(12381002-12381068)
chr1 (1-67)||(12385069-12385135)
chr1 (1-69)||(50484301-50484369)
chr1 (1-67)||(7841802-7841868)
chr1 (1-59)||(12151692-12151750)
chr1 (1-67)||(23862048-23862114)
chr1 (1-57)||(50294155-50294211)
chr1 (1-59)||(40328201-40328260)
chr1 (5-59)||(2845190-2845245)
chr1 (1-68)||(48327246-48327313)
chr1 (5-65)||(30210806-30210866)
chr1 (20-67)||(35977883-35977930)
chr1 (5-56)||(40988643-40988694)
chr1 (5-59)||(46608471-46608522)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-67)||(207980-208046)
[»] chr5 (21 HSPs)
chr5 (1-67)||(13032036-13032102)
chr5 (1-67)||(32129709-32129775)
chr5 (1-59)||(39902340-39902398)
chr5 (12-66)||(4592719-4592773)
chr5 (1-67)||(4895827-4895893)
chr5 (1-59)||(11775717-11775775)
chr5 (1-67)||(37266648-37266714)
chr5 (1-59)||(35660701-35660759)
chr5 (1-67)||(1475730-1475796)
chr5 (1-55)||(14349733-14349787)
chr5 (1-67)||(40753254-40753320)
chr5 (3-67)||(8441065-8441129)
chr5 (1-59)||(18625513-18625571)
chr5 (121-250)||(29984736-29984866)
chr5 (1-40)||(43309062-43309101)
chr5 (5-59)||(10173873-10173927)
chr5 (5-67)||(34827111-34827172)
chr5 (1-55)||(3057246-3057300)
chr5 (1-59)||(23253718-23253776)
chr5 (1-59)||(38283828-38283886)
chr5 (5-50)||(10242766-10242811)
[»] chr4 (27 HSPs)
chr4 (1-67)||(12153088-12153154)
chr4 (1-67)||(33247220-33247286)
chr4 (1-67)||(34778338-34778404)
chr4 (1-67)||(5416559-5416625)
chr4 (1-67)||(12241500-12241566)
chr4 (1-67)||(52018700-52018766)
chr4 (1-68)||(17080732-17080799)
chr4 (1-68)||(19902010-19902077)
chr4 (1-67)||(5763254-5763320)
chr4 (1-67)||(18207132-18207198)
chr4 (1-67)||(56558196-56558262)
chr4 (1-56)||(12312595-12312650)
chr4 (1-59)||(23610567-23610625)
chr4 (1-59)||(38079812-38079870)
chr4 (1-67)||(39862434-39862500)
chr4 (1-67)||(47922167-47922233)
chr4 (1-48)||(3952262-3952309)
chr4 (1-56)||(33262644-33262699)
chr4 (1-59)||(24073542-24073600)
chr4 (5-59)||(25442271-25442325)
chr4 (5-64)||(16567388-16567447)
chr4 (1-59)||(37002333-37002391)
chr4 (1-59)||(56269159-56269217)
chr4 (5-53)||(26428574-26428622)
chr4 (1-59)||(5524382-5524440)
chr4 (11-59)||(3326441-3326489)
chr4 (11-55)||(23119486-23119530)
[»] chr6 (14 HSPs)
chr6 (1-68)||(4804364-4804431)
chr6 (1-67)||(29698080-29698146)
chr6 (1-67)||(32737791-32737857)
chr6 (1-68)||(1249238-1249305)
chr6 (1-68)||(7162000-7162067)
chr6 (1-59)||(27826463-27826521)
chr6 (5-60)||(227660-227715)
chr6 (1-44)||(17944102-17944145)
chr6 (1-68)||(21159461-21159524)
chr6 (1-41)||(30460763-30460803)
chr6 (121-180)||(18065747-18065806)
chr6 (1-39)||(12412582-12412620)
chr6 (5-51)||(28696736-28696782)
chr6 (7-60)||(13888611-13888664)
[»] chr8 (21 HSPs)
chr8 (1-67)||(30426761-30426827)
chr8 (1-59)||(5033031-5033089)
chr8 (1-67)||(36991273-36991339)
chr8 (1-67)||(41511179-41511245)
chr8 (1-59)||(10652711-10652768)
chr8 (1-59)||(28069644-28069702)
chr8 (1-55)||(28318994-28319048)
chr8 (1-67)||(10672604-10672670)
chr8 (7-67)||(12177662-12177722)
chr8 (7-67)||(12422090-12422150)
chr8 (1-59)||(24101941-24101999)
chr8 (1-66)||(40695339-40695404)
chr8 (1-60)||(8412178-8412237)
chr8 (6-56)||(44859264-44859314)
chr8 (1-50)||(37966534-37966583)
chr8 (1-59)||(34612498-34612556)
chr8 (5-37)||(21492730-21492762)
chr8 (1-65)||(28584582-28584645)
chr8 (5-65)||(39143443-39143503)
chr8 (117-189)||(42578733-42578805)
chr8 (7-59)||(44888560-44888612)
[»] chr3 (25 HSPs)
chr3 (1-67)||(40851690-40851756)
chr3 (1-67)||(43720039-43720105)
chr3 (1-67)||(2229900-2229966)
chr3 (1-59)||(19830524-19830583)
chr3 (1-59)||(550908-550966)
chr3 (9-55)||(34373685-34373731)
chr3 (1-65)||(34373750-34373814)
chr3 (121-189)||(46461891-46461959)
chr3 (1-44)||(27033591-27033634)
chr3 (7-55)||(46167322-46167370)
chr3 (1-56)||(12402893-12402948)
chr3 (121-180)||(34936743-34936802)
chr3 (5-60)||(48084743-48084798)
chr3 (1-59)||(3009174-3009232)
chr3 (1-59)||(31523750-31523808)
chr3 (1-59)||(42613015-42613073)
chr3 (1-65)||(41727031-41727095)
chr3 (5-40)||(32577476-32577511)
chr3 (1-56)||(52859473-52859528)
chr3 (1-59)||(20485810-20485868)
chr3 (26-64)||(25506612-25506650)
chr3 (1-51)||(49289043-49289093)
chr3 (1-59)||(49679352-49679410)
chr3 (108-189)||(17057118-17057199)
chr3 (11-55)||(31996801-31996845)
[»] chr2 (21 HSPs)
chr2 (1-59)||(28564816-28564874)
chr2 (1-68)||(41983431-41983498)
chr2 (1-67)||(35316742-35316808)
chr2 (1-68)||(10877618-10877684)
chr2 (1-59)||(13238606-13238664)
chr2 (1-59)||(39465700-39465758)
chr2 (2-56)||(42075456-42075510)
chr2 (1-46)||(45625154-45625199)
chr2 (121-189)||(6204535-6204603)
chr2 (1-56)||(374530-374585)
chr2 (1-59)||(2061302-2061360)
chr2 (1-59)||(8988791-8988849)
chr2 (1-67)||(23259579-23259645)
chr2 (1-59)||(29188588-29188646)
chr2 (107-162)||(41982542-41982597)
chr2 (1-55)||(374932-374986)
chr2 (30-68)||(673184-673222)
chr2 (1-55)||(12949399-12949453)
chr2 (1-59)||(23459928-23459986)
chr2 (1-41)||(3354845-3354885)
chr2 (7-55)||(38397012-38397060)
[»] scaffold0250 (1 HSPs)
scaffold0250 (1-67)||(7064-7130)
[»] scaffold0035 (1 HSPs)
scaffold0035 (11-67)||(16499-16555)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-56)||(73932-73987)
[»] scaffold0008 (1 HSPs)
scaffold0008 (4-59)||(9293-9348)
[»] scaffold0456 (1 HSPs)
scaffold0456 (1-39)||(13641-13679)
[»] scaffold0171 (1 HSPs)
scaffold0171 (1-59)||(17388-17446)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-55)||(22534-22588)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-67)||(6527-6585)
[»] scaffold0468 (1 HSPs)
scaffold0468 (7-59)||(5535-5587)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 121 - 255
Target Start/End: Original strand, 18947314 - 18947448
Alignment:
Q  121 ctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatggttgagattagaatgcttnnnnnnngcatttatttatcgaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||| || |    
T  18947314 ctccatttataccatttcacttcatagatgttggacatgtggcaaatataaaaccaatggttgagattagaaggcttagaaaaagcatttatttaccgga 18947413  T
Q  221 aaataaacacacgcctctgctcttcctcctttgct 255  Q
    |||||||||||||||||||||||||||||||||||    
T  18947414 aaataaacacacgcctctgctcttcctcctttgct 18947448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 21151135 - 21151069
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  21151135 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagagaatcctaaccc 21151069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7362551 - 7362497
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7362551 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 7362497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 45260519 - 45260576
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagagga 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45260519 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatagagagga 45260576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 12139301 - 12139245
Alignment:
Q  11 tttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12139301 tttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 12139245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47226166 - 47226229
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaac 65  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  47226166 tttatgtgt-tttatctctccaaattgaagaaatagagaaacacataaatggagaggatcctaac 47226229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16366501 - 16366438
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaa 64  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  16366501 tttacgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagatgatcctaa 16366438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4888450 - 4888392
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||    
T  4888450 tttatgtgtctttatctctccaaatggaagaaattgagaaacacataaatgaagaggat 4888392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 18198239 - 18198181
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18198239 tttatgtgattttatctctacaaattgaagaaatggagaaacacataaatggagaggat 18198181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 25084820 - 25084878
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||    
T  25084820 tttatgtgtctttatctcttcaaattaaaaaaatggagaaacacataaatggagaggat 25084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 44647945 - 44647890
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||    
T  44647945 tttatgtgtctttatctc---aaattgaagaaatggagaaacacataaatggagaggat 44647890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 9559146 - 9559201
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  9559146 tttatgtgtctttatctctccaaatggaagaaatcgagaaacatataaatggagag 9559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 18948291 - 18948226
Alignment:
Q  124 catttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatggttgagatta 189  Q
    |||||||||||||||||||||| ||| || ||||||||||||||||||||  ||||| ||||||||    
T  18948291 catttataccatttcacttcatggatgtttgacatgtggcaaatataaaattaatggctgagatta 18948226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29631031 - 29630973
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||| |||||||||  |||||||||||||| |||| ||||||||||||    
T  29631031 tttatgtgtctttatatctccaaatgaaagaaatggagaaagacatgaatggagaggat 29630973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 32915938 - 32915884
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||||| ||||||    
T  32915938 tgtgtctttatctctccaaatggaagaaatggagaagaacataaatggggaggat 32915884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 34986043 - 34986096
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatt 60  Q
    ||||| ||||||||||||| | ||||||||||||| ||||||||||||||||||    
T  34986043 tgtctatatctctccaaatggtagaaatggagaaagacataaatggagaggatt 34986096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 32916158 - 32916098
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaac 65  Q
    ||||| |||||||||| |||| |||||||||||||||   |||||||||||||||||||||    
T  32916158 tgtgtatttatctctcaaaatggaagaaatggagaaagttataaatggagaggattctaac 32916098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 6882150 - 6882214
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaac 65  Q
    ||||||||||||||||||| ||||| ||| |||||||||||   |||||| |||||||| |||||    
T  6882150 tttatgtgtctttatctcttcaaatggaacaaatggagaaagttataaattgagaggatcctaac 6882214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 47500379 - 47500434
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatt 60  Q
    ||||||| |||||||| |||| | ||||||||||||  ||||||||||||||||||    
T  47500379 tgtgtctatatctctctaaatggtagaaatggagaaggacataaatggagaggatt 47500434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19889116 - 19889174
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| |||||||||||   ||| |||||||||||    
T  19889116 tttatgtgtctttatctctctaaatggaataaatggagaaatttatagatggagaggat 19889174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 36726331 - 36726384
Alignment:
Q  3 tatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    ||||| |||||||||||||||||  |||||||||||| ||  ||||||||||||    
T  36726331 tatgtatctttatctctccaaataaaagaaatggagagactgataaatggagag 36726384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 35752350 - 35752421
Alignment:
Q  117 tttgctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatggttgagatta 189  Q
    ||||||| |||||| |||||||| | ||||||| |  ||||||||||||| |||||| ||||||||| |||||    
T  35752350 tttgctcaatttatcccatttcaat-catagatgtatgacatgtggcaaaaataaaatcaatggttgtgatta 35752421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 47271205 - 47271257
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||||||||| | |||||| | | ||||| |||||||    
T  47271205 tgtctttatctctccaaattgaagaattagagaaagagacaaatgaagaggat 47271257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45978005 - 45977936
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccccct 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45978005 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccccct 45977936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12381002 - 12381068
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12381002 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 12381068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12385069 - 12385135
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12385069 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 12385135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 50484369 - 50484301
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccccc 69  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||    
T  50484369 tttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaaccccc 50484301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7841802 - 7841868
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||    
T  7841802 tttatgtgtctttatctctccaaattgaagaaatggaaaaacatataaatggagagaatcctaaccc 7841868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12151750 - 12151692
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  12151750 tttatgtgtctttatctctccaaattgaataaatggagaaacacataaatggggaggat 12151692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23862048 - 23862114
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  23862048 tttatgtgtctttatctttccaaattgaagaaatagagaaacacatgaatgaagaggattctaaccc 23862114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 50294155 - 50294211
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagagg 57  Q
    ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  50294155 tttatgtgtctttatctctccaaatggaagaaattgagaaacacgtaaatggagagg 50294211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40328260 - 40328201
Alignment:
Q  1 tttatgtgtcttt-atctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||| ||||||||||||| |||||||| ||||||||||||||| |||||||    
T  40328260 tttatgtgtcttttatctctccaaattaaagaaatgaagaaacacataaatgaagaggat 40328201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 2845245 - 2845190
Alignment:
Q  5 tgtgtctttatctctccaaattga-agaaatggagaaacacataaatggagaggat 59  Q
    ||||| |||||||||||||||||| |||||| |||||| |||||||||||||||||    
T  2845245 tgtgtatttatctctccaaattgatagaaatagagaaaaacataaatggagaggat 2845190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 48327246 - 48327313
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    |||||||  |||||| ||||||||| |||||||| || |||||||||||||||||||||  |||||||    
T  48327246 tttatgtacctttatatctccaaatggaagaaattgataaacacataaatggagaggatcttaacccc 48327313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 30210806 - 30210866
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaac 65  Q
    |||||||||||||||| |||| ||| |||||||| |  ||||||||||||||||| |||||    
T  30210806 tgtgtctttatctctctaaatagaataaatggaggacaacataaatggagaggatcctaac 30210866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 35977930 - 35977883
Alignment:
Q  20 ccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||| |||||||| | ||||||||||||||||||||| |||||||    
T  35977930 ccaaattaaagaaatgaataaacacataaatggagaggatcctaaccc 35977883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 40988694 - 40988643
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    ||||||||||||||||||||| ||| |||||||||||   ||||||||||||    
T  40988694 tgtgtctttatctctccaaatagaaaaaatggagaaagttataaatggagag 40988643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 46608471 - 46608522
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||| ||||||||| ||||||||||||    |||||||||||||||||    
T  46608471 tgtgtctttatttctccaaatggaagaaatggag---gacataaatggagaggat 46608522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 208046 - 207980
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  208046 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 207980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13032102 - 13032036
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13032102 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 13032036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32129709 - 32129775
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  32129709 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaaccc 32129775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39902398 - 39902340
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39902398 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 39902340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 4592773 - 4592719
Alignment:
Q  12 ttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacc 66  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592773 ttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacc 4592719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4895827 - 4895893
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||    
T  4895827 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatgaagaggatcctaaccc 4895893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11775775 - 11775717
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11775775 tttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggat 11775717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37266714 - 37266648
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||    
T  37266714 tttatgtgtctttatctctccaaattgaagaaatggaaaaacacgtaaatggagaggatcctaaccc 37266648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 35660701 - 35660759
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  35660701 tttatgtgtctttatctctccaaattgaagaaacggagaaacacataaatagagaggat 35660759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1475730 - 1475796
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||| |||||||    
T  1475730 tttatgtgtctttatcactccaaattgaagaaatgaaaaaacacataaatgaagaggatcctaaccc 1475796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14349787 - 14349733
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  14349787 tttatgtgtctttatctttccaaattaaagaaatggagaaacacataaatggaga 14349733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 40753254 - 40753320
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  40753254 tttatgtgcttttatctctccaaattaaagaaatggagaagcacataaatggagaggatcctaaccc 40753320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 8441065 - 8441129
Alignment:
Q  3 tatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||| |||||||||||||||||| |||| ||||||||||||||||||||| ||| |||||||    
T  8441065 tatgtgtatttatctctccaaattgatgaaacggagaaacacataaatggagatgatcctaaccc 8441129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18625513 - 18625571
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||    
T  18625513 tttatgtgtctttatctctccaaatgaaagaaattgaaaaacacataaatggagaggat 18625571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 29984866 - 29984736
Alignment:
Q  121 ctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatggttgagattagaatgctt-nnnnnnngcatttatttatcga 219  Q
    |||||||||||||| |||||||||| ||| || ||||||||  ||||| ||||||||||| |||||||| || ||||          | || ||||| |     
T  29984866 ctccatttataccaattcacttcatggatgtttgacatgtgaaaaataaaaaaccaatggctgagattaaaaggcttcgaaaaaaatacttgtttattgg 29984767  T
Q  220 aaaataaacacacgcctctgctcttcctcct 250  Q
    |||||||||||||||||||||||||||||||    
T  29984766 aaaataaacacacgcctctgctcttcctcct 29984736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43309101 - 43309062
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaa 40  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  43309101 tttatgtgtctttatctcttcaaattgaagaaatggagaa 43309062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 10173927 - 10173873
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||||  | |||||||||||  |||||||||||||||||    
T  10173927 tgtgtctttatctctccaaatgaaggaaatggagaaggacataaatggagaggat 10173873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 34827172 - 34827111
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||| |||||| |||||||||| ||||| |||||||| |||||| |||||||    
T  34827172 tgtgtctttatctcttcaaatttaagaaatgga-aaacatataaatggtgaggatcctaaccc 34827111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3057246 - 3057300
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    |||| |||||||||||||| ||||| ||||||||||||| | |||||| ||||||    
T  3057246 tttaagtgtctttatctcttcaaatagaagaaatggagagagacataattggaga 3057300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23253776 - 23253718
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||| ||||||||||||| | ||||||||||||| |  |||||||| |||||    
T  23253776 tttatgtgtctctatctctccaaatggtagaaatggagaaaaatttaaatggataggat 23253718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38283828 - 38283886
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||| ||||||||||||||| | ||||||||||| |  |||||| |||||||    
T  38283828 tttatgtgtctatatctctccaaattgtaaaaatggagaaaaatttaaatgaagaggat 38283886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 10242811 - 10242766
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaat 50  Q
    ||||||||||||||||||||| | ||||||||||| | ||||||||    
T  10242811 tgtgtctttatctctccaaatggtagaaatggagagaaacataaat 10242766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12153154 - 12153088
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12153154 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 12153088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33247220 - 33247286
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33247220 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 33247286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 34778404 - 34778338
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34778404 tttatgtgtctttatctctccacattgaagaaatggagaaacacataaatggagaggattctaaccc 34778338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5416559 - 5416625
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5416559 tttatgtgtctttatctgtccaaattgaagaaatggagaaacacataaattgagaggattctaaccc 5416625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12241500 - 12241566
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  12241500 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaaccc 12241566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 52018766 - 52018700
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52018766 tttatgtgtttttatctctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 52018700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17080732 - 17080799
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  17080732 tttatctgtctttatctctccaaattgaagaaatggagaaacacataaatggaggggatcctaacccc 17080799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19902010 - 19902077
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||    
T  19902010 tttatgtgtctttatctctccaaattgaagaaatagagaaacacataaatggagaggatcttaacccc 19902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5763254 - 5763320
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||    
T  5763254 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagatgatcctaaccc 5763320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18207132 - 18207198
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  18207132 tttatgtgtctttatctttccaaattgaagaaattgagaaacacataaatggagaggatcctaaccc 18207198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 56558262 - 56558196
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||    
T  56558262 tttatgtgtctttatctctccaaattgaagaaatagagaaacatataaatggagaggatcctaaccc 56558196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12312595 - 12312650
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12312595 tttatgtgtctttatctctctaaattgaagaaatggagaaacacataaatggagag 12312650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23610625 - 23610567
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23610625 tttatgtatctttatctctccaaattgaagaaatggagaaacatataaatggagaggat 23610567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38079812 - 38079870
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  38079812 tttatgtgtctttatctctccaaattgaaaaaatggagaaacgcataaatggagaggat 38079870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 39862500 - 39862434
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||| |||||||    
T  39862500 tttatgtgtctttatctctccaaattgaagaaaatgagaaacacataaatgaagaggatcctaaccc 39862434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 47922167 - 47922233
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||    
T  47922167 tttacgtgtctttatctctctaaattgaagaaatggagaaacacataaattgagaggatcctaaccc 47922233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3952262 - 3952309
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataa 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3952262 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataa 3952309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 33262644 - 33262699
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    |||||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  33262644 tttatgtgtctttatctctccaaattgaagaaatagaaaaatacataaatggagag 33262699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24073600 - 24073542
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||| ||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  24073600 tttatgtgccttcatctctccaaatggaagaaattgagaaacacataaatggagaggat 24073542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 25442271 - 25442325
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||| ||||||||||||||   ||||||||||||||||    
T  25442271 tgtgtctttatctctccaaatggaagaaatggagaaggccataaatggagaggat 25442325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 16567388 - 16567447
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaa 64  Q
    ||||||||||||| | |||||||||||||| |||| | ||||||||| ||||||||||||    
T  16567388 tgtgtctttatcttttcaaattgaagaaattgagagaaacataaatgtagaggattctaa 16567447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 37002333 - 37002391
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| |||||||||||   |||||||||||||||    
T  37002333 tttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 37002391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 56269159 - 56269217
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| |||||||||||   |||||||||||||||    
T  56269159 tttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 56269217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 26428622 - 26428574
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatgga 53  Q
    ||||||| ||||||||||||||| ||||||||||||  |||||||||||    
T  26428622 tgtgtctatatctctccaaattgtagaaatggagaaggacataaatgga 26428574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5524440 - 5524382
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| ||||||| |||   |||||||||||||||    
T  5524440 tttatgtgtctttatctctctaaatggaacaaatggaaaaatttataaatggagaggat 5524382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 3326489 - 3326441
Alignment:
Q  11 tttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||| ||||| ||||||||||| |  |||||||||||||||||    
T  3326489 tttatctctcaaaattaaagaaatggaggaggacataaatggagaggat 3326441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 23119486 - 23119530
Alignment:
Q  11 tttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    ||||||||||||||| ||||||||||||| ||  |||||||||||    
T  23119486 tttatctctccaaatggaagaaatggagagactaataaatggaga 23119530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4804431 - 4804364
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  4804431 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaacccc 4804364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29698146 - 29698080
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29698146 tttatgtgtctttatttctccaaattgaagaaatggagaaacacataaatggagaggatcctaaccc 29698080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32737857 - 32737791
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  32737857 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcctaaccc 32737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1249238 - 1249305
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  1249238 tttatgtgtctttatctttccaaattgaagaaatggagaaacacataaatggagaggatcttaacccc 1249305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7162067 - 7162000
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||    
T  7162067 tttatgtgtctttatctctccaaattgaagaaatggagaaacacgtaaatagagaggatcctaacccc 7162000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 27826521 - 27826463
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||    
T  27826521 tttatgtgtctttatctctcaaaatggaagaaattgagaaacacataaatggagaggat 27826463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 227660 - 227715
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatt 60  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  227660 tgtgtctatatctctccaaattgtagaaatggagaagcacataaatgaagaggatt 227715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 17944145 - 17944102
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacac 44  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  17944145 tttatgtgtttttatctctccaaattgaagaaatggagaaacac 17944102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 21159461 - 21159524
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    ||||||||||||||| ||||||||||||||||||||    ||||||||| ||||||||| ||||||||    
T  21159461 tttatgtgtctttatatctccaaattgaagaaatgg----acacataaacggagaggatcctaacccc 21159524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30460803 - 30460763
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaa 41  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  30460803 tttatgtgtctttatctctccaaatagaagaaatgaagaaa 30460763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 18065747 - 18065806
Alignment:
Q  121 ctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatgg 180  Q
    |||||||||| || ||| |||| ||||||||  ||||||||||||| |||||||||||||    
T  18065747 ctccatttatccctttttactttatagatatatgacatgtggcaaaaataaaaccaatgg 18065806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12412620 - 12412582
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggaga 39  Q
    ||||||| | |||||||||||||||||||||||||||||    
T  12412620 tttatgtatttttatctctccaaattgaagaaatggaga 12412582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 28696736 - 28696782
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 51  Q
    |||||||||||||||||||||   ||||||||||| |||||||||||    
T  28696736 tgtgtctttatctctccaaatgatagaaatggagagacacataaatg 28696782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 13888611 - 13888664
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatt 60  Q
    ||||| ||||||||||||| | ||||||| ||||  ||||||||||||||||||    
T  13888611 tgtctatatctctccaaatggtagaaatgaagaaggacataaatggagaggatt 13888664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 30426761 - 30426827
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  30426761 tttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaatggagaggatcctaaccc 30426827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5033089 - 5033031
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  5033089 tttatgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggat 5033031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 36991339 - 36991273
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||    
T  36991339 tttacgtgtctttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaaccc 36991273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41511245 - 41511179
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  41511245 tttatgtgtttttatctctccaaattgaagaaatggaaaaacacataaatggagaggatcctaaccc 41511179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10652711 - 10652768
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10652711 tttatgtgt-tttatctctccaaattgaagaaatgaagaaacacataaatggagaggat 10652768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28069702 - 28069644
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||    
T  28069702 tttatgtgtctttatctctccaaatggaagaaattgaaaaacacataaatggagaggat 28069644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28318994 - 28319048
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  28318994 tttatgtgtctttgtctctccaaattgaagaaatggagaaacacgtaaatggaga 28319048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10672604 - 10672670
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||| | ||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||    
T  10672604 tttatgtatttttatctctccaaattgaataaatgaagaaacacataaatgaagaggatactaaccc 10672670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 12177662 - 12177722
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||| ||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||    
T  12177662 tgtccttatctctttaaattgaagaaatggagaaacacataaatagagaggatcctaaccc 12177722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 12422090 - 12422150
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||| ||||||||  ||||||||||||||||||||||||||||| |||||||| |||||||    
T  12422090 tgtccttatctctttaaattgaagaaatggagaaacacataaatagagaggatcctaaccc 12422150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 24101999 - 24101941
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||| ||||||||||||||||||||| || |||| || |||||||||||||||||||||    
T  24101999 tttacgtgtctttatctctccaaattaaaaaaatagaaaaacacataaatggagaggat 24101941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 40695339 - 40695404
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacc 66  Q
    ||||||| |||||||| |||||||||||||||||||| ||| |||||||| | |||||| ||||||    
T  40695339 tttatgtttctttatccctccaaattgaagaaatggataaatacataaatagggaggatcctaacc 40695404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8412237 - 8412178
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatt 60  Q
    ||||||||| |||||||||| |||| ||| ||||| ||||| ||||||||||||||||||    
T  8412237 tttatgtgtatttatctctctaaatggaaaaaatgaagaaaaacataaatggagaggatt 8412178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 44859264 - 44859314
Alignment:
Q  6 gtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    ||||||||||||||||||||| |||||| ||| |||||| |||||||||||    
T  44859264 gtgtctttatctctccaaattaaagaaaaggaaaaacacgtaaatggagag 44859314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 37966534 - 37966583
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaat 50  Q
    ||||||| |||||||||||||||||  |||||||||||||| ||||||||    
T  37966534 tttatgtatctttatctctccaaataaaagaaatggagaaagacataaat 37966583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 34612556 - 34612498
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| ||||||| |||   |||||||||||||||    
T  34612556 tttatgtgtctttatctctctaaatggaacaaatggaaaaatttataaatggagaggat 34612498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 21492762 - 21492730
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatgga 37  Q
    ||||||||||||||||||||| |||||||||||    
T  21492762 tgtgtctttatctctccaaatggaagaaatgga 21492730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 28584582 - 28584645
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaac 65  Q
    ||||| ||| ||||||||||||||| ||| ||||||||||| ||| ||||| |||||||| ||||    
T  28584582 tttatatgtttttatctctccaaatggaataaatggagaaagaca-aaatgaagaggattttaac 28584645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 39143503 - 39143443
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaac 65  Q
    ||||| |||| ||||||||||  |||||||||||||| |||| |||| ||||||| |||||    
T  39143503 tgtgtttttacctctccaaataaaagaaatggagaaaaacattaatgaagaggatcctaac 39143443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 42578733 - 42578805
Alignment:
Q  117 tttgctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatggttgagatta 189  Q
    ||||||| |||||  ||||||||  |||||||| |  ||||||||||||| |||||| |||||| ||||||||    
T  42578733 tttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagatta 42578805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 44888612 - 44888560
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||| ||| ||||||||| |   |||||||||||||||    
T  44888612 tgtctttatctctccaaatagaaaaaatggagacaattataaatggagaggat 44888560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 40851756 - 40851690
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  40851756 tttatgtgtctttatctctccaaattgaagaaatggagaaatacataaatggagaggatcctaaccc 40851690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 43720039 - 43720105
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  43720039 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaagatcctaaccc 43720105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2229966 - 2229900
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  2229966 tttatgtgtctttatctctccaaattaaagaaatagagaaacacataaatgaagaggatcctaaccc 2229900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19830524 - 19830583
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacat-aaatggagaggat 59  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  19830524 tttatgtgtctttatctctccaaattgaagaaatggaaaaacacataaaatggagaggat 19830583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 550908 - 550966
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  550908 tttatgtatctttatctctccaaatggaagaaatggagaaagacataaatggagaggat 550966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 34373685 - 34373731
Alignment:
Q  9 tctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34373685 tctttatctctccaaattgaagaaatggagaaacacataaatggaga 34373731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34373814 - 34373750
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaac 65  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||  ||||||||||| |||||    
T  34373814 tttatgtgtctttatctctccaaattgaaaaaatgaagaaacacattgatggagaggatcctaac 34373750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 46461891 - 46461959
Alignment:
Q  121 ctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatggttgagatta 189  Q
    ||||||||||||||||||| ||||| ||| || |||||||||||||||||||| |||||| ||||||||    
T  46461891 ctccatttataccatttcatttcatggatgtttgacatgtggcaaatataaaatcaatggctgagatta 46461959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 27033634 - 27033591
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacac 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  27033634 tttatgtgtctttatctctccaaattgaagaaatggagaaacac 27033591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 46167370 - 46167322
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  46167370 tgtctttatctctctaaattgaagaaatggaaaaacacataaatggaga 46167322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 12402948 - 12402893
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    |||||||||||||||||||||||||| |  ||||| ||||||||||||||||||||    
T  12402948 tttatgtgtctttatctctccaaattaagaaaatgaagaaacacataaatggagag 12402893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 34936743 - 34936802
Alignment:
Q  121 ctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatgg 180  Q
    |||||||||| || ||||||||||||||| |  ||||||||||||| |||||||||||||    
T  34936743 ctccatttatcccttttcacttcatagatttgtgacatgtggcaaaaataaaaccaatgg 34936802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 48084798 - 48084743
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggatt 60  Q
    ||||||| ||||||||||||| | ||||||||||||  ||||||||||||||||||    
T  48084798 tgtgtctatatctctccaaatggtagaaatggagaaggacataaatggagaggatt 48084743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3009232 - 3009174
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| |||||||||||   |||||||||||||||    
T  3009232 tttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 3009174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31523750 - 31523808
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| |||||||||||   |||||||||||||||    
T  31523750 tttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 31523808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42613073 - 42613015
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| |||||||||||   |||||||||||||||    
T  42613073 tttatgtgtctttatctctctaaatagaacaaatggagaaatttataaatggagaggat 42613015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41727031 - 41727095
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaac 65  Q
    ||||||||||||| ||| | ||||| |||||||| |||||| |||||||| ||||||||| ||||    
T  41727031 tttatgtgtctttgtcttttcaaatagaagaaatagagaaaaacataaatcgagaggattttaac 41727095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Complemental strand, 32577511 - 32577476
Alignment:
Q  5 tgtgtctttatctctccaaattgaagaaatggagaa 40  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32577511 tgtgtctttatctctccaaatagaagaaatggagaa 32577476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 52859473 - 52859528
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    ||||||||| ||||| ||||||||| | ||||||||||||| ||||||||| ||||    
T  52859473 tttatgtgtatttatttctccaaatggtagaaatggagaaagacataaatgaagag 52859528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 20485810 - 20485868
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||| | ||||||||||||| | ||||||||||||| |  ||||||||||||||    
T  20485810 tttatgtgtttatatctctccaaatggtagaaatggagaaaaatttaaatggagaggat 20485868  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 25506612 - 25506650
Alignment:
Q  26 tgaagaaatggagaaacacataaatggagaggattctaa 64  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  25506612 tgaagaaatggagaaacatataaatggagaggatcctaa 25506650  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 49289043 - 49289093
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatg 51  Q
    ||||||||||||||| |||||||||  || ||||||||||| |||||||||    
T  49289043 tttatgtgtctttatttctccaaatgaaacaaatggagaaaaacataaatg 49289093  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49679352 - 49679410
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| ||||  || |||||||||||   |||||||||||||||    
T  49679352 tttatgtgtctttatctctctaaatgaaacaaatggagaaatttataaatggagaggat 49679410  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 17057118 - 17057199
Alignment:
Q  108 gagtgcatctttgctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatggttgagatta 189  Q
    |||| |||||||||||||||||  ||  |||||||| ||||| |  |||| |||||||| || ||||||| |||||||||||    
T  17057118 gagtccatctttgctccatttacccctgttcacttcttagatgtgtgacacgtggcaaaaatgaaaccaacggttgagatta 17057199  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 31996845 - 31996801
Alignment:
Q  11 tttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    ||||||||||||||| ||||||||||||| ||  |||||||||||    
T  31996845 tttatctctccaaatagaagaaatggagacactaataaatggaga 31996801  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28564874 - 28564816
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28564874 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 28564816  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 41983431 - 41983498
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  41983431 tttatgtgtctttatctctccaaattaaagaaatggagaaacacataaatggagaggatcttaacccc 41983498  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 35316808 - 35316742
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  35316808 tttatatgtctttatctctccaaattgaagaaatggagaaacacgtaaatggagaggatcctaaccc 35316742  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 10877684 - 10877618
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaacccc 68  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  10877684 tttatgtgt-tttatctctccaaattgaagaaatggagaaacacataaatgaagaggatcctaacccc 10877618  T

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Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 13238664 - 13238606
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  13238664 tttatgtgtctttatctctccaaattgaagaaattgagaaacgcataaatggagaggat 13238606  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39465758 - 39465700
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39465758 tttatgtgtttttatctctccaaattgaaaaaatggagaaacacataaatggagaggat 39465700  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 42075456 - 42075510
Alignment:
Q  2 ttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    |||||||||||||||||||||||| ||||||||||| ||||  ||||||||||||    
T  42075456 ttatgtgtctttatctctccaaatggaagaaatggataaactaataaatggagag 42075510  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45625154 - 45625199
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacat 46  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||    
T  45625154 tttacgtgtctttatctctctaaattgaagaaatggagaaacacat 45625199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 6204535 - 6204603
Alignment:
Q  121 ctccatttataccatttcacttcatagatattggacatgtggcaaatataaaaccaatggttgagatta 189  Q
    |||||||||||||| ||||||||| |||| ||  ||||||||||||||||||| ||||||  |||||||    
T  6204535 ctccatttataccaattcacttcacagatgtttaacatgtggcaaatataaaatcaatggcagagatta 6204603  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 374530 - 374585
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    ||||||||| |||||||||| ||||  |||||| ||||||||||||||||||||||    
T  374530 tttatgtgtttttatctctctaaatgaaagaaagggagaaacacataaatggagag 374585  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2061360 - 2061302
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||| |||||||||||||||||| |||||||| |||| ||  |||||||||||||||    
T  2061360 tttatgcgtctttatctctccaaatggaagaaattgagatactaataaatggagaggat 2061302  T

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Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 8988849 - 8988791
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| |||||||||||   |||||||||||||||    
T  8988849 tttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 8988791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23259579 - 23259645
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||| |||||||||| ||| |||||||||||||| ||||||  ||||||| ||| |||||||||||    
T  23259579 tttatatgtctttatccctcaaaattgaagaaatgaagaaacgtataaatgaagatgattctaaccc 23259645  T

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Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29188646 - 29188588
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| |||||||||||   |||||||||||||||    
T  29188646 tttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggat 29188588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 41982542 - 41982597
Alignment:
Q  107 ggagtgcatctttgctccatttataccatttcacttcatagatattggacatgtgg 162  Q
    |||||||||||||||||||||||| || ||| |||||| ||||||  |||||||||    
T  41982542 ggagtgcatctttgctccatttatccctttttacttcacagatatgtgacatgtgg 41982597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 374986 - 374932
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    |||||||||||||||||||| |||| ||| |||||||||||   |||||||||||    
T  374986 tttatgtgtctttatctctctaaatggaacaaatggagaaatttataaatggaga 374932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 673222 - 673184
Alignment:
Q  30 gaaatggagaaacacataaatggagaggattctaacccc 68  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  673222 gaaatggagaaacacataaatggagaggatcttaacccc 673184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 12949453 - 12949399
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    ||||||| ||||||||||||||||| | ||||| ||||||| ||||| |||||||    
T  12949453 tttatgtatctttatctctccaaataggagaaacggagaaagacatagatggaga 12949399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23459928 - 23459986
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||||  ||| ||| |||||||||||   |||||||||||||||    
T  23459928 tttatgtgtctttatctctctgaatggaacaaatggagaaatttataaatggagaggat 23459986  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3354845 - 3354885
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaa 41  Q
    |||||||||||||||||||| |||| ||| |||||||||||    
T  3354845 tttatgtgtctttatctctctaaatagaacaaatggagaaa 3354885  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 38397060 - 38397012
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    ||||| |||||||||||||||| |||||||||| | | |||||||||||    
T  38397060 tgtctatatctctccaaattgatgaaatggagagaaaaataaatggaga 38397012  T

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Target: scaffold0250 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 7130 - 7064
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  7130 tttatatgtctttatctctgcaaattgaagaaatgaagaaacacataaatggagaggatcctaaccc 7064  T

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Target: scaffold0035 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 16499 - 16555
Alignment:
Q  11 tttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  16499 tttatctctccaaattgaagaaatggagaaacacataaattgagaggatcctaaccc 16555  T

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Target: scaffold0006 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 73932 - 73987
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagag 56  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  73932 tttatgtgtttttatctctctaaattgaagaaatggagaaacacataaatggagag 73987  T

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Target: scaffold0008 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 9293 - 9348
Alignment:
Q  4 atgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  9293 atgtgcctttatctctccaaatggaagaaattgagaaacacataaatggagaggat 9348  T

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Target: scaffold0456 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13679 - 13641
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggaga 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13679 tttatgtgtctttatctctccaaattgaagaaatggaga 13641  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17388 - 17446
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    |||||||||||||||||||| |||| ||| ||||| |||||   |||||||||||||||    
T  17388 tttatgtgtctttatctctctaaatggaacaaatgaagaaatttataaatggagaggat 17446  T

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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22534 - 22588
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggaga 55  Q
    ||||||||| |||||||||| ||||  |||||||||||| | |||||||||||||    
T  22534 tttatgtgtatttatctctctaaatgtaagaaatggagatagacataaatggaga 22588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 6527 - 6585
Alignment:
Q  1 tttatgtgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggattctaaccc 67  Q
    |||||||||||||||||||| |||||||        ||||||||||||||||||||||| |||||||    
T  6527 tttatgtgtctttatctctcaaaattga--------agaaacacataaatggagaggatcctaaccc 6585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 5587 - 5535
Alignment:
Q  7 tgtctttatctctccaaattgaagaaatggagaaacacataaatggagaggat 59  Q
    ||||||||||||||||||| ||||||||| |||    ||||||||||||||||    
T  5587 tgtctttatctctccaaatggaagaaatgaagaggatcataaatggagaggat 5535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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