View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_low_69 (Length: 263)

Name: NF2371_low_69
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_low_69
NF2371_low_69
[»] chr2 (2 HSPs)
chr2 (1-256)||(28438638-28438893)
chr2 (163-224)||(13518652-13518713)
[»] chr8 (2 HSPs)
chr8 (127-256)||(10647298-10647428)
chr8 (186-249)||(14625879-14625942)
[»] chr3 (3 HSPs)
chr3 (119-249)||(32197680-32197809)
chr3 (126-198)||(10942367-10942439)
chr3 (176-248)||(27820497-27820569)
[»] chr4 (6 HSPs)
chr4 (125-255)||(17263254-17263383)
chr4 (133-249)||(44810502-44810618)
chr4 (127-228)||(12880060-12880161)
chr4 (161-249)||(28571771-28571859)
chr4 (129-173)||(48747466-48747510)
chr4 (126-247)||(18464168-18464289)
[»] chr6 (3 HSPs)
chr6 (105-245)||(11005066-11005205)
chr6 (125-242)||(24322427-24322544)
chr6 (120-249)||(26271054-26271183)
[»] chr5 (3 HSPs)
chr5 (126-249)||(19963974-19964097)
chr5 (129-249)||(27248057-27248177)
chr5 (126-254)||(15434918-15435046)
[»] chr7 (2 HSPs)
chr7 (140-245)||(9788744-9788849)
chr7 (185-253)||(24234920-24234988)
[»] chr1 (2 HSPs)
chr1 (133-252)||(25784284-25784403)
chr1 (124-173)||(36976830-36976880)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 28438638 - 28438893
Alignment:
Q  1 agtctcgtttaagtggttattttgatggaatttagcgtccttccatatttcaagtactcctcaatcattctaaaggttatacgggtacaaggtcgtcaat 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28438638 agtctcgtttaagtggttattctgatggaatttagcgtccttccatatgtcaagtactcctcaatcattctaaaggtcatacgggtacaaggtcgtcaat 28438737  T
Q  101 cctataggattccgtaaatggtcggatagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtca 200  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28438738 cctataggatttcgtaaatggtcggatagttattaaggcagggacttactctctcgtatgtaattgaaccatagacatagtaaatattcctaaattgtca 28438837  T
Q  201 tcaaaagaaaccatttttacctatgaatctcagaatttcaccacatacctttgctt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28438838 tcaaaagaaaccatttttacctatgaatctcagaatttcaccacatatctttgctt 28438893  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 13518713 - 13518652
Alignment:
Q  163 attgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctat 224  Q
    |||||| |||| |||||||| | ||||||||||| ||||| |||| ||||| ||||||||||    
T  13518713 attgaaacataaacatagtagaaattcctaaattatcatctaaaggaaccacttttacctat 13518652  T

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Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 10647298 - 10647428
Alignment:
Q  127 tagttattaaggcggggactta-ctctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatg 225  Q
    |||||||||||| ||||||||| |||||||||| ||||||||| || |  ||||||| ||||||||||||||||||| |||||||||| |||||| ||||    
T  10647298 tagttattaaggtggggacttaactctctcataggtaattgaaacagaatcatagtatatattcctaaattgtcatctaaagaaaccacttttacatatg 10647397  T
Q  226 aatctcagaatttcaccacatacctttgctt 256  Q
    |||||   |||||||||||||||| ||||||    
T  10647398 aatcttcaaatttcaccacatacccttgctt 10647428  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 14625879 - 14625942
Alignment:
Q  186 attcctaaattgtcatcaaaagaaaccatttttacctatgaatctcagaatttcaccacatacc 249  Q
    ||||||||||||||||| |  | ||||| |||||  ||||||||| ||||||||||||||||||    
T  14625879 attcctaaattgtcatctatcggaaccacttttaaatatgaatcttagaatttcaccacatacc 14625942  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 249
Target Start/End: Original strand, 32197680 - 32197809
Alignment:
Q  119 tggtcggatagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccattttt 218  Q
    |||||||||||||||||||| ||||||||||||||||| | |||||| || ||||||||||||| | ||||||||||||| ||| |||| |||||   ||    
T  32197680 tggtcggatagttattaaggtggggacttactctctcacaggtaattaaaacatagacatagtagaaattcctaaattgtaatctaaaggaacca-cgtt 32197778  T
Q  219 acctatgaatctcagaatttcaccacatacc 249  Q
    || || ||| || ||||||||||||||||||    
T  32197779 acataggaaccttagaatttcaccacatacc 32197809  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 10942367 - 10942439
Alignment:
Q  126 atagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgt 198  Q
    ||||||||||||| ||||||||||||||||||| ||||||||| || | ||  ||| ||||||||||||||||    
T  10942367 atagttattaaggtggggacttactctctcataggtaattgaaacaaaaacgaagttaatattcctaaattgt 10942439  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 27820569 - 27820497
Alignment:
Q  176 catagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatgaatctcagaatttcaccacatac 248  Q
    ||||||| | ||| ||||||||||||| |||  ||||| |||||||||  ||||| |||||||||||| ||||    
T  27820569 catagtagaaatttctaaattgtcatctaaaagaaccacttttacctaaaaatcttagaatttcaccagatac 27820497  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 125 - 255
Target Start/End: Original strand, 17263254 - 17263383
Alignment:
Q  125 gatagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctat 224  Q
    |||||||||||  | ||||||||||||||||| | ||||||||  ||||||||||||| | |||||||||||||| |  |||| ||||| |||||||||     
T  17263254 gatagttattattgtggggacttactctctcacaagtaattgatacatagacatagtagaaattcctaaattgtcgtttaaag-aaccacttttacctag 17263352  T
Q  225 gaatctcagaatttcaccacatacctttgct 255  Q
    |||||| ||||||||| |||||||| |||||    
T  17263353 gaatcttagaatttcatcacatacccttgct 17263383  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 44810502 - 44810618
Alignment:
Q  133 ttaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatgaatctca 232  Q
    ||||| || |||||||| ||||||||  |||||||| ||||  ||||||| ||||| ||||||| ||||| |||||||||| ||| |||||||||||| |    
T  44810502 ttaagacgaggacttacactctcatagataattgaaacataagcatagtagatatttctaaattttcatctaaagaaaccactttcacctatgaatctta 44810601  T
Q  233 gaatttcaccacatacc 249  Q
    |||||| ||||||||||    
T  44810602 gaattttaccacatacc 44810618  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 12880060 - 12880161
Alignment:
Q  127 tagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatga 226  Q
    |||||||||||||| |||  ||| |||||| | |||||||||  |||  ||||||| ||||| ||||||||||||| |||  ||| | ||||||||||||    
T  12880060 tagttattaaggcgaggagctacactctcacaagtaattgaaatataagcatagtagatatttctaaattgtcatctaaatgaacaacttttacctatga 12880159  T
Q  227 at 228  Q
    ||    
T  12880160 at 12880161  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 249
Target Start/End: Original strand, 28571771 - 28571859
Alignment:
Q  161 taattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatgaatctcagaatttcaccacatacc 249  Q
    |||||||| ||||| |||  || | ||||||||||| ||||| |||| ||||| |||||||||  ||| | ||||||||||||||||||    
T  28571771 taattgaaacataggcatgatagaaattcctaaattatcatctaaaggaaccacttttacctagaaattttagaatttcaccacatacc 28571859  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 48747466 - 48747510
Alignment:
Q  129 gttattaaggcggggacttactctctcatatgtaattgaaccata 173  Q
    ||||||||||||||||||||||||||||||  |||||||| ||||    
T  48747466 gttattaaggcggggacttactctctcatagataattgaaacata 48747510  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 247
Target Start/End: Original strand, 18464168 - 18464289
Alignment:
Q  126 atagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatg 225  Q
    ||||||||||||||   ||||||| ||| |||| ||||||||| | ||   || ||| ||||| |||||||| |||| | || ||||| ||||||||||     
T  18464168 atagttattaaggcaaagacttacactcccataggtaattgaaacttaagtattgtagatatttctaaattgacatctagaggaaccaattttacctatt 18464267  T
Q  226 aatctcagaatttcaccacata 247  Q
    ||||| | |||||||| |||||    
T  18464268 aatcttaaaatttcacaacata 18464289  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 11005205 - 11005066
Alignment:
Q  105 taggattccgtaaatggtcggatagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaa 204  Q
    ||||||| |||| |||||| ||||||||| |||| ||||| |||| ||||| || |||| ||||  |||  |||| || ||||||||||| ||||||| |    
T  11005205 taggatttcgtacatggtcagatagttatcaaggtggggagttacactctcgtaggtaactgaaatataagcata-tagatattcctaaagtgtcatcta 11005107  T
Q  205 aagaaaccatttttacctatgaatctcagaatttcaccaca 245  Q
    ||| ||||| |||||||||||||||| ||||||||||||||    
T  11005106 aaggaaccacttttacctatgaatcttagaatttcaccaca 11005066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 24322544 - 24322427
Alignment:
Q  125 gatagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctat 224  Q
    |||||||||||||| || ||||||  || ||| ||||||||||| |||| |||||||| ||| ||||||||||||||| |||  ||||| ||||| ||||    
T  24322544 gatagttattaaggtggagacttatactttcacatgtaattgaaacataaacatagtagatagtcctaaattgtcatctaaatgaaccacttttatctat 24322445  T
Q  225 gaatctcagaatttcacc 242  Q
    ||| || | |||||||||    
T  24322444 gaaacttataatttcacc 24322427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 26271183 - 26271054
Alignment:
Q  120 ggtcggatagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccattttta 219  Q
    ||||| ||||||  ||||| ||| | |||||| |||| | |||||||||  |||| |||| || | |||||| |||| | ||| |||  ||||| |||||    
T  26271183 ggtcgaatagttgataaggtgggaaattactccctcacaggtaattgaaatataggcataatagaaattccttaattttaatctaaatgaaccactttta 26271084  T
Q  220 cctatgaatctcagaatttcaccacatacc 249  Q
    | || |||||| ||||||||||||||||||    
T  26271083 cttaggaatcttagaatttcaccacatacc 26271054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 249
Target Start/End: Original strand, 19963974 - 19964097
Alignment:
Q  126 atagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatg 225  Q
    ||||||||||||| || |||||||||||||| | |||||||||  |||  |||| || | ||| ||||||||||||| || ||||| | |||||||||      
T  19963974 atagttattaaggtggagacttactctctcacaggtaattgaattataagcataatagaaatttctaaattgtcatctaaggaaacaacttttacctaga 19964073  T
Q  226 aatctcagaatttcaccacatacc 249  Q
    ||||| ||||||||||||||||||    
T  19964074 aatcttagaatttcaccacatacc 19964097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 27248177 - 27248057
Alignment:
Q  129 gttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatgaat 228  Q
    ||||||||| ||| |||||  ||||||| ||| ||||||| ||||  ||||||| | ||||||||||||  ||  |||| ||||| ||||||||| ||||    
T  27248177 gttattaagacggagactttgtctctcacatgcaattgaaacatatgcatagtataaattcctaaattgatatataaaggaaccacttttacctaagaat 27248078  T
Q  229 ctcagaatttcaccacatacc 249  Q
    || | ||||||||||||||||    
T  27248077 cttaaaatttcaccacatacc 27248057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 254
Target Start/End: Complemental strand, 15435046 - 15434918
Alignment:
Q  126 atagttattaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatg 225  Q
    |||||||||||| || | |||||| ||||||||  |||||||| ||||  || |||  ||||||||||||| ||||| |||| || || |||| | ||||    
T  15435046 atagttattaagacgagaacttacactctcatagataattgaaacataagcagagttgatattcctaaattttcatctaaaggaatcacttttgcgtatg 15434947  T
Q  226 aatctcagaatttcaccacatacctttgc 254  Q
    ||||| ||||||| || ||||||| ||||    
T  15434946 aatcttagaatttgacgacatacccttgc 15434918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 245
Target Start/End: Complemental strand, 9788849 - 9788744
Alignment:
Q  140 ggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatgaatctcagaatttc 239  Q
    ||||| ||||||||||||| ||||||||| ||||  ||||||| | ||| ||||||| ||||| |||| || ||||||||| ||||| ||| | ||||||    
T  9788849 ggggagttactctctcataggtaattgaaacataatcatagtagagatttctaaattatcatctaaaggaaacatttttacttatgagtcttaaaatttc 9788750  T
Q  240 accaca 245  Q
    | ||||    
T  9788749 atcaca 9788744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 24234988 - 24234920
Alignment:
Q  185 tattcctaaattgtcatcaaaagaaaccatttttacctatgaatctcagaatttcaccacatacctttg 253  Q
    |||||||| |||| |||  |||||||||| |||||  ||||||||| | ||||||||||||||||||||    
T  24234988 tattcctacattgccatataaagaaaccacttttatatatgaatcttaaaatttcaccacatacctttg 24234920  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 252
Target Start/End: Original strand, 25784284 - 25784403
Alignment:
Q  133 ttaaggcggggacttactctctcatatgtaattgaaccatagacatagtaaatattcctaaattgtcatcaaaagaaaccatttttacctatgaatctca 232  Q
    |||||||  |||||||| |||| ||  ||||||||| |||| |||||| | | ||||||||||||||||| |||| ||||| |||||| ||| |||||      
T  25784284 ttaaggcatggacttacactctgatcggtaattgaaacataaacatagaagaaattcctaaattgtcatctaaaggaaccacttttacttatcaatcttt 25784383  T
Q  233 gaatttcaccacataccttt 252  Q
     ||||  |||||||||||||    
T  25784384 aaattctaccacataccttt 25784403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 36976830 - 36976880
Alignment:
Q  124 ggatagtta-ttaaggcggggacttactctctcatatgtaattgaaccata 173  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  36976830 ggatagttagttaaggcggggacttactctctcacatgtaattgaaacata 36976880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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