View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_7 (Length: 542)
Name: NF2371_low_7
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_7 |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 25067828 - 25068351
Alignment:
| Q |
19 |
cttccgctgcctcacctataaatgaatcaatttcatccacatcatacactccaaaacctcaaacttctcccattccagaagttcgacaatcccttcgtga |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25067828 |
cttccgctgcctcacctataaatgaatcaatttcatccacatcatacactccagaacctcaaacttctcccattccagaagttcgacaatcccttcgtga |
25067927 |
T |
|
| Q |
119 |
caagaaccccccgatatggcataaagactaccacatgttcgcaaaagtcaacacatcctcctcggagccaacgtctaagtcaggtactcggtatcctcta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25067928 |
caagaaccccccgatatggcataaagactaccacatgttcgcaaaagtcaacacatcctcctcggagccaacgtctaagtcaggtactcggtatcctcta |
25068027 |
T |
|
| Q |
219 |
tctcattatctttcatattcacaaatctctcctacacattgtgcctttctagctaacactacagcacataaagagcccaaatcatatcatcaagctatcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25068028 |
tctcattatctttcatattcacaaatttctcctacacattgtgcctttctagctaacattacagcacataaagagcccaaatcatatcatcaagctatcc |
25068127 |
T |
|
| Q |
319 |
aagatccacaatggcaggcagcaatgaatacagaattagaagcgttacaacaaaacaacacatggagtcttgtacctcttcctcctggtcataagcccat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25068128 |
aagatccacaatggcaggcagcaatgaatacagaattagaagcgttacaacaaaacaacacatggagtcttgtacctcttcctcctggtcataagcccat |
25068227 |
T |
|
| Q |
419 |
tggttgcaaatgggtatacaaaataaagtataaatctgacggcaccatagagcgatataaggcacgccttgttgctaagggatacactcaggttgaaggg |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25068228 |
tggttgcaaatgggtatacaaaataaagtataaatctgacggcaccatagagcgatataaggcacgccttgttgctaagggatacactcaggttgaaggg |
25068327 |
T |
|
| Q |
519 |
attgactatcaagaaacattttcc |
542 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
25068328 |
attgactatcaagaaacattttcc |
25068351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 9674933 - 9675456
Alignment:
| Q |
19 |
cttccgctgcctcacctataaatgaatcaatttcatccacatcatacactccaaaacctcaaacttctcccattccagaagttcgacaatcccttcgtga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9674933 |
cttccgctgcctcacctataaatgaatcaatttcatccacatcatacactccagaacctcaaacttctcccattccagaagttcgacaatcccttcgtga |
9675032 |
T |
|
| Q |
119 |
caagaaccccccgatatggcataaagactaccacatgttcgcaaaagtcaacacatcctcctcggagccaacgtctaagtcaggtactcggtatcctcta |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9675033 |
caagaacctcccgatatggcataaagactaccacatgttcgcaaaagtcaacacatcctcctcggagccaacgtctaagtcaggtactcggtatcctcta |
9675132 |
T |
|
| Q |
219 |
tctcattatctttcatattcacaaatctctcctacacattgtgcctttctagctaacactacagcacataaagagcccaaatcatatcatcaagctatcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
9675133 |
tctcattatctttcatattcacaaatctctcctacacattgtgcctttctagctaacattacaacacataaagagcccaaatcatatcatcaagctatcc |
9675232 |
T |
|
| Q |
319 |
aagatccacaatggcaggcagcaatgaatacagaattagaagcgttacaacaaaacaacacatggagtcttgtacctcttcctcctggtcataagcccat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9675233 |
aagatccacaatggcaggcagcaatgaatacagaattagaagcgttacaacaaaacaacacatggagtcttgtacctcttcctcctggtcataagcccat |
9675332 |
T |
|
| Q |
419 |
tggttgcaaatgggtatacaaaataaagtataaatctgacggcaccatagagcgatataaggcacgccttgttgctaagggatacactcaggttgaaggg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
9675333 |
tggttgcaaatgggtatacaaaataaagtataaatctgacggcaccatagagcgatataaggcacgccttgttgctaagggatacgctcaggttgaaggg |
9675432 |
T |
|
| Q |
519 |
attgactatcaagaaacattttcc |
542 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
9675433 |
attgactatcaagaaacattttcc |
9675456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 532
Target Start/End: Complemental strand, 11052303 - 11051790
Alignment:
| Q |
19 |
cttccgctgcctcacctataaatgaatcaatttcatccacatcatacactccaaaacctcaaacttctcccattccagaagttcgacaatcccttcgtga |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||| ||||| || |||||||||||||||||| | ||||||| |||||||||||| | |
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|
| T |
11052303 |
cttccgctgcctcacctataaacgaatcaattccatccacatcacacacttcaggccctcaaacttctcccattactcaagttcgtcaatcccttcgtta |
11052204 |
T |
|
| Q |
119 |
caagaaccccccgatatggcataaagactaccacatgttcgcaaaagtcaacacatcctcctcggagccaacgtctaagtcaggtactcggtatcctcta |
218 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||| |
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| T |
11052203 |
taagaatcccctgatatggcataaagactaccacatgttcgcaaaagtcaacacatcttcctcggagacaacgcctaagtcaagtactcggtatcctcta |
11052104 |
T |
|
| Q |
219 |
tctcattatctttcatattcacaaatctctcctacacattgtgcctttctagctaacactacagcacataaagagcccaaatcatatcatcaagctatcc |
318 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||| | ||||||||||| |||| ||| || ||| | | | |
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|
| T |
11052103 |
tctcgttatctttcatattcacacatctcttctacacattgtgcctttctagctaacattacatcccataaagagcctcaatcctatgataaagttgttc |
11052004 |
T |
|
| Q |
319 |
aagatccacaatggcaggcagcaatgaatacagaattagaagcgttacaacaaaacaacacatggagtcttgtacctcttcctcctggtcataagcccat |
418 |
Q |
| |
|
| ||||||||||||||| || ||||||||||| |||||||||| ||||||||| |||| |||||||| |||||||||||||||| |||||||| ||||| |
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|
| T |
11052003 |
atgatccacaatggcagtcatcaatgaatacataattagaagctttacaacaagacaatacatggagccttgtacctcttcctcttggtcatagacccat |
11051904 |
T |
|
| Q |
419 |
tggttgcaaatgggtatacaaaataaagtataaatctgacggcaccatagagcgatataaggcacgccttgttgctaagggatacactcaggttgaaggg |
518 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
11051903 |
tcgttgcaaatgggtatacataataaagtataaatctgacggcaccatagaacgctataaggcacgccttgttgcaaagggatacacttaggttgaagga |
11051804 |
T |
|
| Q |
519 |
attgactatcaaga |
532 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11051803 |
attgactatcaaga |
11051790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 13546872 - 13547299
Alignment:
| Q |
19 |
cttccgctgcctcacctataaatgaatcaatttcatccacatcatacactccaaaacctcaaacttctcccattccagaagttcgacaatcccttcgtga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13546872 |
cttccgctgcctcacctataaatgaatcaatttcatccacatcatacactccagaacctcaaacttctcccattccagaagttcgacaatcccttcgtga |
13546971 |
T |
|
| Q |
119 |
caagaaccccccgatatggcataaagactaccacatgttcgcaaaagtcaacacatcctcctcggagccaacgtctaagtcaggtactcggtatcctcta |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13546972 |
caagaaccacccgatatggcataaagactaccacatgttcgcaaaagtcaacacatcctcctcggagccaacgtctaagtcaggtactcggtatcctcta |
13547071 |
T |
|
| Q |
219 |
tctcattatctttcatattcacaaatctctcctacacattgtgcctttctagctaacactacagcacataaagagcccaaatcatatcatcaagctatcc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13547072 |
tctcattatctttcatattcacaaatctctcctacacattgtgcctttctagctaacattacaacacataaagagcccaaatcatatcatcaagctatcc |
13547171 |
T |
|
| Q |
319 |
aagatccacaatggcaggcagcaatgaatacagaattagaagcgttacaacaaaacaacacatggagtcttgtacctcttcctcctggtcataagcccat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13547172 |
aagatccacaatggcaggcagcaatgaatacagaattagaagcgttacaacaaaacaacacatggagtcttgtacctcttcctcctggtcataagcccat |
13547271 |
T |
|
| Q |
419 |
tggttgcaaatgggtatacaaaataaag |
446 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
13547272 |
tggttgcaaatgggtatacaaaataaag |
13547299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 32 - 324
Target Start/End: Original strand, 26253199 - 26253490
Alignment:
| Q |
32 |
acctataaatgaatcaatttcatccacatcatacactccaaaacctcaaacttctcccattccagaagttcgacaatcccttcgtgacaagaaccccccg |
131 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| || | |||||||||||||| ||||| ||||||||||||| | ||||||||| | |||| | |
|
|
| T |
26253199 |
acctataaatgaatcaattccatccacaacatacacttcata-cctcaaacttctcctattccccaagttcgacaatcacatcgtgacaatagccccatg |
26253297 |
T |
|
| Q |
132 |
atatggcataaagactaccacatgttcgcaaaagtcaacacatcctcctcggagccaacgtctaagtcaggtactcggtatcctctatctcattatcttt |
231 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||||| || |||||||||||||||||| ||||||| |
|
|
| T |
26253298 |
atatggcataaagactaaaacatgtccgcaaaagtcaacacatcctccttagagtcaacgtctaagtcagatattcggtatcctctatctcaatatcttt |
26253397 |
T |
|
| Q |
232 |
catattcacaaatctctcctacacattgtgcctttctagctaacactacagcacataaagagcccaaatcatatcatcaagctatccaagatc |
324 |
Q |
| |
|
|||||||||| |||||| ||||||||| |||||||||||||||| |||||| || |||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
26253398 |
catattcacatatctcttctacacattatgcctttctagctaactttacagcccacaaagagccttgatcatatgatcaagctatccatgatc |
26253490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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