View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_70 (Length: 262)
Name: NF2371_low_70
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 36443222 - 36442996
Alignment:
| Q |
18 |
gaagacatgaattcctatgctggttatgtgcgtaagaattcttttcagactttcattcttcaatgtcttctacctcatttatactaattcacatgggact |
117 |
Q |
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| T |
36443222 |
gaagacatgaattcctatgctggttatgtgcgtaagaattcttttcagactttcattcttcaatgtcttctacctcatttatactaattcacatgggact |
36443123 |
T |
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| Q |
118 |
gcaaaaatgttgtcgaatctgagtggattaagtcgacctatgagggtgcttttttctaaacctcaacaatttaagtttaaaattttgtcattttatggtt |
217 |
Q |
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| T |
36443122 |
gcaaaaatgttgtcgaatctgagtggattaagtcgacctatgagggtgcttttttctaaacctcaacaatttaagtttaaaattttgtcattttatggtt |
36443023 |
T |
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| Q |
218 |
atgtgttattctaaataactataggtt |
244 |
Q |
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| T |
36443022 |
atgtgttattctaaataactgtaggtt |
36442996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 129
Target Start/End: Original strand, 39160607 - 39160703
Alignment:
| Q |
33 |
tatgctggttatgtgcgtaagaattcttttcagactttcattcttcaatgtcttctacctcatttatactaattcacatgggactgcaaaaatgttg |
129 |
Q |
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| T |
39160607 |
tatgctggttatgtaggtaagatttcttttcagacttcaattctttgatgtcttctacttcatttatactaattcaaatagggttgtaaaaatgttg |
39160703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 32898792 - 32898836
Alignment:
| Q |
187 |
tttaagtttaaaattttgtcattttatggttatgtgttattctaa |
231 |
Q |
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| T |
32898792 |
tttaagtttaaatttgtatcattttatggttatatgttattctaa |
32898836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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