View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_79 (Length: 248)
Name: NF2371_low_79
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_79 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 6041080 - 6040852
Alignment:
| Q |
1 |
tacgaattagcaatatgacggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgtaatgaacggcgcgttggcaca |
100 |
Q |
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| T |
6041080 |
tacgaattagcaatatgacggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgtaatgaacggcgcgttggcaca |
6040981 |
T |
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| Q |
101 |
aaagctccaaatactcgtcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6040980 |
aaagctccaaatactcgtcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggt |
6040881 |
T |
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| Q |
201 |
gcaaacattatgagcacgatgaagggtat |
229 |
Q |
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| T |
6040880 |
gcaaacattatgagcacgatgaagggtat |
6040852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6045711 - 6045491
Alignment:
| Q |
1 |
tacgaattagcaatatgacggagaagatcgtcggtaccaaaatactcgatattgatatcggtcacatgaccggagctgtaatgaacggcgcgttggcaca |
100 |
Q |
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||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||| | |
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| T |
6045711 |
tacgaatcagcgatatgacggagaagatcatcggtaccaaaatactcgatattgatatcggttgcttggccggagctgtaatcaacggcgcgttggcata |
6045612 |
T |
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| Q |
101 |
aaagctccaaatactcgtcggtgccaaggtcagtcccgatattgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggt |
200 |
Q |
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| T |
6045611 |
aaatctctaaataaaagtcggagctgaggtcagtaccgatgttgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggt |
6045512 |
T |
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| Q |
201 |
gcaaacattatgagcacgatg |
221 |
Q |
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|||||| |||||||| ||||| |
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| T |
6045511 |
gcaaacgttatgagcgcgatg |
6045491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 6052254 - 6052180
Alignment:
| Q |
141 |
attgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacattatgagc |
215 |
Q |
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||||||||||| |||||| || |||| ||||| || || ||||||||||||||||||||||||||||| ||||| |
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| T |
6052254 |
attgggcatgttaatggtgcgaaagagaaaagggtctttggagattttgcgccatgtggtgcaaacattgtgagc |
6052180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 6133649 - 6133717
Alignment:
| Q |
141 |
attgggcatgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaacatt |
209 |
Q |
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| T |
6133649 |
attgggcatgttgatagtgcgatagagggaatggtcctttgagatttcgcgccatatggtgcaaacatt |
6133717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 6037257 - 6037198
Alignment:
| Q |
147 |
catgtcgatggtgtgatagaggaaaggatcctttgagattttgcgccatgtggtgcaaac |
206 |
Q |
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|||||||||||| ||||||||||||| || || |||||||||||||| || |||||||| |
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| T |
6037257 |
catgtcgatggtacgatagaggaaagggtctttggagattttgcgccacgtagtgcaaac |
6037198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6052391 - 6052333
Alignment:
| Q |
1 |
tacgaattagcaatatgacggagaagatcgtcggtaccaaaatactcgatattgatatc |
59 |
Q |
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||||||||||| ||| | |||||||||| || ||||||||||||||||| |||||||| |
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| T |
6052391 |
tacgaattagcgatacggtggagaagatcatcagtaccaaaatactcgatgttgatatc |
6052333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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