View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_82 (Length: 243)
Name: NF2371_low_82
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9855163 - 9855382
Alignment:
| Q |
1 |
tttatgtaatgatttactatgttcggtttaaaataagtgccaccttacatattaannnnnnncaagtaactgtaacatttgnnnnnnntatttcaggtta |
100 |
Q |
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| T |
9855163 |
tttatgtaatgatttactatgttcggtttaaaataagtgccaccttacatatt---ttttttcaaataactgtaacatttgaaaaaaatatttcaggtta |
9855259 |
T |
|
| Q |
101 |
cttttaatttccaatatacaattttaattattttttcttcaattgtactctttaattaacactacatgcatcaaccttaagttgttattctccgtttaga |
200 |
Q |
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| T |
9855260 |
tttttaatttccaatatacaattt-aattatttttt------------tctttaattaacactacatgcatcaatcttaagttgttattctccatttaga |
9855346 |
T |
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| Q |
201 |
tttatgataacatgaatacatgatagctaataagaa |
236 |
Q |
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| T |
9855347 |
tttatgataacatgaatacatgatagctaataagaa |
9855382 |
T |
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