View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_9 (Length: 532)
Name: NF2371_low_9
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 36555126 - 36554622
Alignment:
| Q |
12 |
atgaagcttcacaaaactggcaaaaaatgtatggtcatttagataagcctgaatgaggaaagtcattttgcacaaatgaacttttattgccttataattt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36555126 |
atgaagcttcacaaaactggcaaaaaatgtatggtcatttagataagcctgaatgaggaaagtcattttgcacaaatgaacttttattgccttataattt |
36555027 |
T |
|
| Q |
112 |
tac-ggtggtttagagaaagagacattcagagaccaaataaagtttataccaaattgaaggtaccagaaagcaagattttcattcttattttctgcgaag |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36555026 |
tactggtggtttagagaaagagacattcagagaccaaataaagtttataccaaattgaaggtaccagaaagcaagattttcattcttattttctgcgaag |
36554927 |
T |
|
| Q |
211 |
ccttcacattgaattctgaattgagaagacttagcatattaagtttctgttaataatgttttaaaatttgtctgatattcattttcataggatttaaccg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36554926 |
ccttcacattgaattctgaattgagaagacttagcatattaagtttctgttaataatgttttaaaatttgtctgatattcattttcataggatttaaccg |
36554827 |
T |
|
| Q |
311 |
taatgaaattttggcctctatcttcttcattcaattgtatcatatttttaccatgtgttgtctaaatgaccataatggataaatttcaaagatcgtcgta |
410 |
Q |
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| T |
36554826 |
taatgaaattttggcctctatcttcttcattcaattgtatcatatttttaccatgtgttgtctaaatgaccataatggataaatttcaaagatcgtcgta |
36554727 |
T |
|
| Q |
411 |
tgtttgtgtagtttgtttgtttacgatactgacatttataatagcttagagaatcaaacaacttagatgtacttccataactactctatttagaattctg |
510 |
Q |
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| T |
36554726 |
tgtttgtgtagtttgtttgtttacgatgctgacatttataatagcttagagaatcaaacaacttagatgtacttccataactactctatttagaattctg |
36554627 |
T |
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| Q |
511 |
ctttt |
515 |
Q |
| |
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||||| |
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| T |
36554626 |
ctttt |
36554622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 502
Target Start/End: Original strand, 3989219 - 3989708
Alignment:
| Q |
12 |
atgaagcttcacaaaactggcaaaaaatgtatggtcatttagataagcctgaatgaggaaagtcattttgcacaaatgaacttttattgccttataattt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3989219 |
atgaagcttcacaaaactggcaaaaaatgtatggtcatttagataagcctgaatgaggaaagtcattttgcacaaatgaacttttattgccttataattt |
3989318 |
T |
|
| Q |
112 |
tacggt-ggtttagagaaagagacattcagagaccaaataaagtttataccaaattgaaggtaccagaaagcaagattttcattcttattttctgcgaag |
210 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3989319 |
tactgttggtttagagaaagagacattcagagaccaaataaagtttataccaaattgaaggtaccagaaagcaagattttcattcttattttctgcggag |
3989418 |
T |
|
| Q |
211 |
ccttcacattgaattctgaattgagaagacttagcatattaagtttctgttaataatgttttaaaatttgtctgatattcattttcataggatttaaccg |
310 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3989419 |
ccttcacattgttttctgaattgagaagacttggcatattaagtttctgttaataatgttttaaaatttgtctgatattcattttcataggatttaaccg |
3989518 |
T |
|
| Q |
311 |
taatgaaattttggcctctatcttcttcattcaattgtatcatatttttaccatgtgttgtctaaatgaccataatggataaatttcaaagatcgtcgta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3989519 |
taatgaaattttggcctctatcttcttcattcaattgtatcatatttttaccatgtgttgtctaaatgaccataatggataaatttcaaagatcgtcgta |
3989618 |
T |
|
| Q |
411 |
tgtttgtgtagtttgtttgtttacgatactg-acatttataatagcttagagaatcaaacaacttagatgtacttccataactactctattta |
502 |
Q |
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| T |
3989619 |
tgtttgtgtagtttgtttgtttacgatactgaacatttataatagcttagagaatca---aactttgatgtacttccataactactctattta |
3989708 |
T |
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