View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2371_low_93 (Length: 235)

Name: NF2371_low_93
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2371_low_93
NF2371_low_93
[»] chr8 (20 HSPs)
chr8 (1-221)||(36355962-36356182)
chr8 (121-221)||(2258096-2258201)
chr8 (121-221)||(42636371-42636476)
chr8 (121-221)||(28207620-28207725)
chr8 (121-221)||(4384141-4384245)
chr8 (121-221)||(24695743-24695847)
chr8 (121-221)||(37813410-37813513)
chr8 (137-221)||(27801231-27801320)
chr8 (138-221)||(1135174-1135262)
chr8 (121-213)||(167857-167954)
chr8 (121-221)||(12684499-12684604)
chr8 (164-221)||(33067546-33067603)
chr8 (164-221)||(35901975-35902032)
chr8 (145-212)||(3520822-3520894)
chr8 (181-221)||(9735309-9735349)
chr8 (121-162)||(16723264-16723305)
chr8 (121-213)||(33013041-33013138)
chr8 (121-161)||(1876552-1876592)
chr8 (177-221)||(12829876-12829920)
chr8 (161-213)||(33949563-33949615)
[»] chr4 (29 HSPs)
chr4 (120-221)||(35777704-35777810)
chr4 (121-221)||(7852549-7852654)
chr4 (121-221)||(8297867-8297972)
chr4 (121-221)||(24175404-24175508)
chr4 (121-221)||(51834910-51835015)
chr4 (143-221)||(41462067-41462150)
chr4 (121-221)||(25115269-25115373)
chr4 (121-221)||(27953046-27953150)
chr4 (125-221)||(7444390-7444492)
chr4 (121-218)||(49084408-49084511)
chr4 (125-207)||(49400612-49400699)
chr4 (120-221)||(47995742-47995848)
chr4 (121-221)||(20394634-20394737)
chr4 (125-221)||(50426989-50427090)
chr4 (177-221)||(8261165-8261209)
chr4 (177-221)||(8274582-8274626)
chr4 (161-213)||(31429318-31429370)
chr4 (161-221)||(53014211-53014271)
chr4 (135-213)||(50341880-50341963)
chr4 (188-221)||(23605672-23605705)
chr4 (132-218)||(34391715-34391806)
chr4 (124-162)||(8260201-8260239)
chr4 (124-162)||(8273619-8273657)
chr4 (177-211)||(24229661-24229695)
chr4 (121-221)||(13585266-13585367)
chr4 (120-161)||(49951760-49951801)
chr4 (161-221)||(31690423-31690483)
chr4 (164-212)||(36702828-36702876)
chr4 (161-213)||(39195740-39195792)
[»] chr5 (16 HSPs)
chr5 (120-221)||(18229607-18229713)
chr5 (121-221)||(30104800-30104905)
chr5 (121-221)||(30501145-30501250)
chr5 (121-221)||(30541488-30541593)
chr5 (121-221)||(34899141-34899246)
chr5 (121-221)||(16667297-16667402)
chr5 (177-221)||(7968447-7968491)
chr5 (123-221)||(9276585-9276688)
chr5 (121-221)||(39558772-39558877)
chr5 (161-208)||(2918615-2918662)
chr5 (121-221)||(7719200-7719305)
chr5 (121-213)||(40530448-40530545)
chr5 (169-221)||(23117232-23117284)
chr5 (125-218)||(17692262-17692360)
chr5 (121-213)||(15720063-15720160)
chr5 (177-221)||(8221179-8221223)
[»] chr7 (17 HSPs)
chr7 (121-221)||(27123270-27123375)
chr7 (121-219)||(28770473-28770576)
chr7 (121-221)||(44537337-44537442)
chr7 (121-221)||(35496578-35496683)
chr7 (161-221)||(25886211-25886271)
chr7 (181-221)||(40753952-40753992)
chr7 (123-221)||(43234788-43234891)
chr7 (143-207)||(42936025-42936093)
chr7 (121-221)||(43224092-43224197)
chr7 (123-218)||(21727414-21727514)
chr7 (146-221)||(28663144-28663224)
chr7 (177-221)||(48488183-48488227)
chr7 (121-221)||(9718999-9719100)
chr7 (172-221)||(26239546-26239595)
chr7 (121-213)||(35731283-35731380)
chr7 (121-213)||(39320995-39321092)
chr7 (161-213)||(7653617-7653669)
[»] chr2 (10 HSPs)
chr2 (120-212)||(19890203-19890300)
chr2 (121-221)||(9448959-9449063)
chr2 (121-221)||(1334889-1334994)
chr2 (120-221)||(31017313-31017419)
chr2 (123-199)||(14295626-14295707)
chr2 (121-221)||(34904793-34904898)
chr2 (123-221)||(31452352-31452454)
chr2 (124-218)||(38533877-38533975)
chr2 (161-218)||(38533354-38533411)
chr2 (161-221)||(37993119-37993179)
[»] chr1 (16 HSPs)
chr1 (121-221)||(2864139-2864243)
chr1 (121-218)||(47187829-47187931)
chr1 (161-221)||(31889203-31889264)
chr1 (161-221)||(43397020-43397080)
chr1 (120-221)||(48022358-48022464)
chr1 (121-208)||(38491217-38491309)
chr1 (125-207)||(44829272-44829359)
chr1 (121-213)||(39150578-39150675)
chr1 (170-221)||(34409784-34409834)
chr1 (120-162)||(8794411-8794453)
chr1 (120-213)||(38748734-38748832)
chr1 (121-162)||(2995040-2995081)
chr1 (121-221)||(32562359-32562463)
chr1 (120-161)||(33791809-33791850)
chr1 (121-161)||(39973888-39973928)
chr1 (121-161)||(42573839-42573879)
[»] chr3 (10 HSPs)
chr3 (143-218)||(29083908-29083988)
chr3 (121-219)||(42846012-42846116)
chr3 (132-212)||(49362368-49362453)
chr3 (161-221)||(40673475-40673535)
chr3 (161-213)||(42939873-42939925)
chr3 (121-212)||(52638173-52638268)
chr3 (186-221)||(26143164-26143199)
chr3 (170-213)||(51351327-51351370)
chr3 (121-221)||(48180176-48180281)
chr3 (161-221)||(26900028-26900088)
[»] chr6 (10 HSPs)
chr6 (145-221)||(1841003-1841084)
chr6 (161-221)||(31855095-31855155)
chr6 (121-207)||(2692449-2692540)
chr6 (137-221)||(17215688-17215777)
chr6 (164-211)||(32823721-32823768)
chr6 (161-211)||(34231970-34232020)
chr6 (161-221)||(2864917-2864978)
chr6 (170-221)||(9762852-9762904)
chr6 (161-221)||(24103783-24103843)
chr6 (177-221)||(30801798-30801842)
[»] scaffold0268 (1 HSPs)
scaffold0268 (161-221)||(20254-20313)
[»] scaffold0036 (1 HSPs)
scaffold0036 (120-221)||(62530-62636)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36356182 - 36355962
Alignment:
Q  1 atcttcattaacagtgctgtcataagacttagtcagttaaagctacaaggtatttcaaacattttttattccgataacaaatatgccaaatcgtgttttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36356182 atcttcattaacagtgctgtcataagacttagtcagttaaagctacaaggtatttcaaacattttttattccgataacaaatattccaaatcgtgttttc 36356083  T
Q  101 ataagacatggggtcttgttactctttaagaatcccaaattaagtaattattcttttaaaaactattgcaatttctaatgcatttaatacacaacttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36356082 ataagacatggggtcttgttactctttaagaatcccaaattaagtaattattcttttaaaaactattgcaatttctaatgcatttaatacacaacttttc 36355983  T
Q  201 attaaaaacttaccatttaaa 221  Q
    |||||||||||||||||||||    
T  36355982 attaaaaacttaccatttaaa 36355962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 2258201 - 2258096
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| | |||||||||||||||||| |     ||| |||||| ||||| |||||||||||||||||||||| |||||||||||    
T  2258201 actctttaagcatcccaaatttaataattattcttttaaaaagttaatcattacaatttttaatgtatttaatacacaacttttcatttaaaacttacca 2258102  T
Q  216 tttaaa 221  Q
    ||||||    
T  2258101 tttaaa 2258096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 42636476 - 42636371
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| |||||||||| ||  |||||     ||||| ||||||  |||||||||||||||||||||||||||||||||||||||    
T  42636476 actctttaagcatcccaaatttagtaattattattcaaaaaagtcaactattacaatttacaatgcatttaatacacaacttttcattaaaaacttacca 42636377  T
Q  216 tttaaa 221  Q
    ||||||    
T  42636376 tttaaa 42636371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 28207620 - 28207725
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| |  ||| |||||||||||||     ||||| ||||||| |||||||| |||||||||||||||||||||||||| |||    
T  28207620 actctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaactttcca 28207719  T
Q  216 tttaaa 221  Q
    ||||||    
T  28207720 tttaaa 28207725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 4384245 - 4384141
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| | || ||||| ||||||||||||||||||||     ||||| ||||||| |||||||| |||||||||| |||||||||||| ||| ||    
T  4384245 actctttaagcaccctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaac-tttcattaaaaatttatca 4384147  T
Q  216 tttaaa 221  Q
    ||||||    
T  4384146 tttaaa 4384141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 24695743 - 24695847
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||||||||  |||| |||||||||| |||||||||     ||||| |||||||||||||| | |||||||||||||| ||| ||||||||| |    
T  24695743 actctttaagaatccagaatttagtaattattattttaaaaagtcaactattacaatttctaatgcagtgaatacacaactttttatt-aaaacttacta 24695841  T
Q  216 tttaaa 221  Q
    ||||||    
T  24695842 tttaaa 24695847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 37813513 - 37813410
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa------aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 214  Q
    |||||||||| |||||||||| ||||||||||||||||||      ||| ||| ||||||| |||||||| |||||||||||||||||   ||||||||     
T  37813513 actctttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaacttttcat---aaacttact 37813417  T
Q  215 atttaaa 221  Q
    |||||||    
T  37813416 atttaaa 37813410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 27801320 - 27801231
Alignment:
Q  137 aaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||| ||||||||||||||||||||     ||||| ||||||  |||||||| | |||||||||||| ||||||||||||| |||||||    
T  27801320 aaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttactatttaaa 27801231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 1135174 - 1135262
Alignment:
Q  138 aattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||| ||||||||||||||||||||     ||||| ||||||  |||| ||| |||| |||||||||| ||||||||||||||||||||    
T  1135174 aatttagtaattattcttttaaaaagtcaactattacaattttcaatgtattcaatatacaacttttccttaaaaacttaccatttaaa 1135262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 167954 - 167857
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||||||| ||| |||||| |  |||||||||||||||||     |||||  |||||| |||||||||| |||| ||||||||||| |||||||||    
T  167954 actctttaagtatctcaaatttaaaaattattcttttaaaaagtcaactattataatttccaatgcatttattacataacttttcatttaaaacttac 167857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 12684604 - 12684499
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| || ||||||| | |||||||||||| |||     ||||||| |||||||||||||||| | |||| ||||||| |||||||| |||  |    
T  12684604 actctttaagcattccaaatttaataattattctttcaaagaatcaactattacaatttctaatgcattcattacaaaacttttaattaaaaatttatta 12684505  T
Q  216 tttaaa 221  Q
    ||||||    
T  12684504 tttaaa 12684499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 33067546 - 33067603
Alignment:
Q  164 tattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||| |||| ||||||||||| |||||| ||||||||||| ||||||||| |||||||    
T  33067546 tattacaatgtctaatgcattcaatacaaaacttttcatttaaaacttactatttaaa 33067603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 35901975 - 35902032
Alignment:
Q  164 tattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||| ||||||| |||||||| |||||| ||||||||||||||||||||  |||||||    
T  35901975 tattacaatttccaatgcattcaatacagaacttttcattaaaaacttattatttaaa 35902032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 3520894 - 3520822
Alignment:
Q  145 taattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 212  Q
    ||||||||||||||||||     ||||| || ||| ||||||||| |||||| ||||||||||||||||||||    
T  3520894 taattattcttttaaaaaatcaactattacagtttttaatgcattcaatacataacttttcattaaaaactta 3520822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 9735349 - 9735309
Alignment:
Q  181 catttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  9735349 catttaatacacaacttttcattaaaaatttatcatttaaa 9735309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 16723305 - 16723264
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa 162  Q
    |||||||||| ||||||||||  |||||||||||||||||||    
T  16723305 actctttaagcatcccaaattttgtaattattcttttaaaaa 16723264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 33013041 - 33013138
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||||||| || ||||||| |  |||||||||||||||||     ||||| ||||||| |||| | | ||||||||||||||||| || |||||||    
T  33013041 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttccaatgtactcaatacacaacttttcataaagaacttac 33013138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 1876592 - 1876552
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaa 161  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  1876592 actctttaagcatgctaaattaagtaattattcttttaaaa 1876552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 12829920 - 12829876
Alignment:
Q  177 aatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||||| |||| | || ||||||||||||||||||||||||||    
T  12829920 aatgcattcaatatataatttttcattaaaaacttaccatttaaa 12829876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 33949615 - 33949563
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    ||||||| ||||||| |||||| | ||||||||||||||||| || |||||||    
T  33949615 aactattacaatttcaaatgcactcaatacacaacttttcataaataacttac 33949563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 35777810 - 35777704
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 214  Q
    ||||||||||  |||||||||| ||||||||||||||||||||     ||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  35777810 tactctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaatttctaatgcattcaatacacaacttttcattaaaaacttacc 35777711  T
Q  215 atttaaa 221  Q
    |||||||    
T  35777710 atttaaa 35777704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 7852654 - 7852549
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||| ||||| ||||||||||||||||||||     ||||| ||||||  ||||||||||||||||||||||||||||||||||||| |    
T  7852654 actctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgcatttaatacacaacttttcattaaaaacttacta 7852555  T
Q  216 tttaaa 221  Q
    ||||||    
T  7852554 tttaaa 7852549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 8297867 - 8297972
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaa-----actattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| |||||||||||||||||||     ||| || ||||||| |||||||| ||||||||| |||||||||||||||||| |    
T  8297867 actctttaagcatcccaaatttagtaattattcttttaaaatgtcaactgttacaatttccaatgcattcaatacacaatttttcattaaaaacttacta 8297966  T
Q  216 tttaaa 221  Q
    ||||||    
T  8297967 tttaaa 8297972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 24175508 - 24175404
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaa----actattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccat 216  Q
    |||||||||| |||| ||||| ||||| |||||||||||||    |||||| ||||||  |||||||||||||||||||||||| |  ||||||||||||    
T  24175508 actctttaagcatcctaaatttagtaaatattcttttaaaagtaaactattacaattttaaatgcatttaatacacaacttttcgtacaaaacttaccat 24175409  T
Q  217 ttaaa 221  Q
    |||||    
T  24175408 ttaaa 24175404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 51834910 - 51835015
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||| ||||| || |||||||||||||||||     |||||  |||||| |||||||| ||||||||||||||||||||||| |||| |    
T  51834910 actctttaagcatcctaaatttagcaattattcttttaaaaagtcaactattataatttccaatgcattaaatacacaacttttcattaaaaatttacta 51835009  T
Q  216 tttaaa 221  Q
    ||||||    
T  51835010 tttaaa 51835015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 41462067 - 41462150
Alignment:
Q  143 agtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||||||||||||||||     ||||| |||||||| |||||||||||||| || |||||||||||||||||| |||||||    
T  41462067 agtaattattcttttaaaaagtcaactattacaatttcttatgcatttaatacataatttttcattaaaaacttactatttaaa 41462150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 25115373 - 25115269
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    ||||||||||||||| ||||| |||||||||| |||||||     ||||||| ||||||| |||||| | |||||||||||||| | ||||||||||| |    
T  25115373 actctttaagaatccaaaatttagtaattattattttaaaaagttaactattacaatttccaatgcagtgaatacacaacttttta-taaaaacttacta 25115275  T
Q  216 tttaaa 221  Q
    ||||||    
T  25115274 tttaaa 25115269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 27953150 - 27953046
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| ||| |||||| |||| ||||| |||||||||     ||||| ||||||  |||||||| ||||||||||||||| ||||||||||||||    
T  27953150 actctttaagcatctcaaatttagta-ttattattttaaaaagttaactattacaattttcaatgcattcaatacacaacttttcgttaaaaacttacca 27953052  T
Q  216 tttaaa 221  Q
    ||||||    
T  27953051 tttaaa 27953046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 221
Target Start/End: Complemental strand, 7444492 - 7444390
Alignment:
Q  125 tttaagaatcccaaattaagtaattattcttttaaaaa------ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 218  Q
    |||||| |||||||||| ||||||||| ||||||||||      ||||| ||||||  |||||||| ||||||||||||||| |||||||||||  ||||    
T  7444492 tttaagcatcccaaatttagtaattatacttttaaaaaagtcaactattacaattttcaatgcattcaatacacaacttttctttaaaaacttagtattt 7444393  T
Q  219 aaa 221  Q
    |||    
T  7444392 aaa 7444390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 49084511 - 49084408
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcattt-aatacacaacttttcattaaaaacttacc 214  Q
    |||||||||  |||| ||||| ||||||||||||||||||||     ||||| ||||||  |||| | || |||||||||||||||||||||||||||||    
T  49084511 actctttaattatcctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgaaattcaatacacaacttttcattaaaaacttacc 49084412  T
Q  215 attt 218  Q
    ||||    
T  49084411 attt 49084408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 49400612 - 49400699
Alignment:
Q  125 tttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaa 207  Q
    |||||| |||| ||||| ||||||||||||||||||||     ||||| ||||||| |||| ||||||||||| ||||||||||||||    
T  49400612 tttaagcatcctaaatttagtaattattcttttaaaaaatcaactattacaatttccaatgtatttaatacacgacttttcattaaaa 49400699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 47995848 - 47995742
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 214  Q
    ||||||||||| || | ||||| |||||||| ||||||||||| |     ||| ||||||  |||||||| |||||| |||||||||||||||||||||     
T  47995848 tactctttaagcattctaaatttagtaattactcttttaaaaagttaattattacaattttcaatgcattcaatacataacttttcattaaaaacttaca 47995749  T
Q  215 atttaaa 221  Q
    |||||||    
T  47995748 atttaaa 47995742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 20394634 - 20394737
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| ||||||||||||||||||     ||||||| ||||||| ||| |||| |||||| |  |||||||||||||||| |||    
T  20394634 actctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaatttccaatacattcaataca-acattttcattaaaaactt-cca 20394731  T
Q  216 tttaaa 221  Q
    ||||||    
T  20394732 tttaaa 20394737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 221
Target Start/End: Original strand, 50426989 - 50427090
Alignment:
Q  125 tttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattta 219  Q
    |||||| ||| |||||| ||||||||||||||| ||     ||||||| ||||||| |||||| | || |||||||||||||||||||| |||| |||||    
T  50426989 tttaagcatctcaaatttagtaattattcttttgaaaagtcaactattacaatttccaatgcaatcaacacacaacttttcattaaaaatttactattta 50427088  T
Q  220 aa 221  Q
    ||    
T  50427089 aa 50427090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 8261165 - 8261209
Alignment:
Q  177 aatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||    
T  8261165 aatgcatttaatacataacttttcattaaaaacttactatttaaa 8261209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 8274582 - 8274626
Alignment:
Q  177 aatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||    
T  8274582 aatgcatttaatacataacttttcattaaaaacttactatttaaa 8274626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 31429318 - 31429370
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    ||||||| ||||||| |||||||| |||||||||||||||||| |||||||||    
T  31429318 aactattacaatttccaatgcattcaatacacaacttttcatttaaaacttac 31429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 53014271 - 53014211
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| ||||||| ||| |||| |||||||||||||| ||||||||| |||||||||||    
T  53014271 aactattacaatttccaatacattcaatacacaactttttattaaaaacataccatttaaa 53014211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 50341963 - 50341880
Alignment:
Q  135 ccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    ||||||| ||||||||||||||||||||     ||||| ||||||| || ||||| |||||||||||||||||| |||| ||||    
T  50341963 ccaaatttagtaattattcttttaaaaagtcaactattacaatttccaacgcattcaatacacaacttttcatttaaaatttac 50341880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 23605705 - 23605672
Alignment:
Q  188 tacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||||||||||||||||||||||||||||||    
T  23605705 tacacaacttttcattaaaaacttaccatttaaa 23605672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 34391806 - 34391715
Alignment:
Q  132 atcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 218  Q
    |||| ||||| |||||||||||||||| ||| |     ||| ||||||| |||||| | |||||||||||||| ||||||||||||| ||||    
T  34391806 atccaaaatttagtaattattcttttataaagtcagttattacaatttccaatgcaatcaatacacaactttttattaaaaacttactattt 34391715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 8260201 - 8260239
Alignment:
Q  124 ctttaagaatcccaaattaagtaattattcttttaaaaa 162  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  8260201 ctttaagcatcccaaatttagtaattattcttttaaaaa 8260239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 8273619 - 8273657
Alignment:
Q  124 ctttaagaatcccaaattaagtaattattcttttaaaaa 162  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  8273619 ctttaagcatcccaaatttagtaattattcttttaaaaa 8273657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 24229695 - 24229661
Alignment:
Q  177 aatgcatttaatacacaacttttcattaaaaactt 211  Q
    |||||||||||||||||| ||||||||||||||||    
T  24229695 aatgcatttaatacacaatttttcattaaaaactt 24229661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 13585367 - 13585266
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattctttt-aaaaactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattta 219  Q
    |||||||||| || | ||||| || ||||||| |||| ||||||| || ||||||  |||| ||| | |||| ||||||||||  |||||||||||||||    
T  13585367 actctttaagcattctaaatttagaaattattattttcaaaaactgttacaattttcaatgtattcattacataacttttcatataaaacttaccattta 13585268  T
Q  220 aa 221  Q
    ||    
T  13585267 aa 13585266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 49951801 - 49951760
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaa 161  Q
    ||||||||||| || | |||||||||||||||||||||||||    
T  49951801 tactctttaagcatgctaaattaagtaattattcttttaaaa 49951760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 31690423 - 31690483
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||| |||||||||  |||||||| ||||||||||||||||| | ||| |||| |||||||    
T  31690423 aactgttgcaattttcaatgcattgaatacacaacttttcataagaaatttactatttaaa 31690483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 36702828 - 36702876
Alignment:
Q  164 tattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 212  Q
    |||| ||||||  |||||||| ||||||||| |||||||||||||||||    
T  36702828 tattacaattttcaatgcattcaatacacaatttttcattaaaaactta 36702876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 39195792 - 39195740
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    ||||||| ||||||  |||||||| |||||||||||||||||  |||||||||    
T  39195792 aactattacaattttcaatgcattgaatacacaacttttcatataaaacttac 39195740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 18229713 - 18229607
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 214  Q
    ||||||||||| |||||||||| ||||||||||||||||||||     ||||| ||||||| ||| |||| |||| |||| |||||||||||||||||||    
T  18229713 tactctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaatttccaatacattcaataaacaatttttcattaaaaacttacc 18229614  T
Q  215 atttaaa 221  Q
    |||||||    
T  18229613 atttaaa 18229607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 30104800 - 30104905
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| ||||| |||| ||||||||| |     ||| ||||||| |||||||| ||||||||||||||||||||||||||||||    
T  30104800 actctttaagcatcccaaatttagtaactatttttttaaaaagtcaacaattacaatttccaatgcattcaatacacaacttttcattaaaaacttacca 30104899  T
Q  216 tttaaa 221  Q
     |||||    
T  30104900 cttaaa 30104905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 30501250 - 30501145
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| |||||||||||||||||||| |     ||| ||||||| ||| |||| |||||||||||||||||| ||||||||| |    
T  30501250 actctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttacta 30501151  T
Q  216 tttaaa 221  Q
    ||||||    
T  30501150 tttaaa 30501145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 30541593 - 30541488
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| |||||||||||||||||||| |     ||| ||||||| ||| |||| |||||||||||||||||| ||||||||| |    
T  30541593 actctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaacttttcatttaaaacttacta 30541494  T
Q  216 tttaaa 221  Q
    ||||||    
T  30541493 tttaaa 30541488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 34899246 - 34899141
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaac-----tattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||  ||||||||||||||||||||      |||| ||||||||||||||||||||| | ||||||||||| ||||||||| |    
T  34899246 actctttaagcatcccaaatatagtaattattcttttaaaaagacaattattacaatttctaatgcatttaatatataacttttcatttaaaacttacta 34899147  T
Q  216 tttaaa 221  Q
    ||||||    
T  34899146 tttaaa 34899141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 16667402 - 16667297
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| ||| |||||| | |||||||||||||||||| |     ||| ||||||| ||| |||| ||||||||| |||||||||||||||||| |    
T  16667402 actctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaatttccaatacattcaatacacaatttttcattaaaaacttacta 16667303  T
Q  216 tttaaa 221  Q
    ||||||    
T  16667302 tttaaa 16667297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 7968447 - 7968491
Alignment:
Q  177 aatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  7968447 aatgcatttaatacacaacttttcattaaaaacttactatttaaa 7968491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 9276688 - 9276585
Alignment:
Q  123 tctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatt 217  Q
    |||| ||| |||||||||| |||||||||| |||||||||     |||||  |||||  |||||||| |||||| ||||||||||||||||||||| |||    
T  9276688 tcttcaagcatcccaaatttagtaattatttttttaaaaaatcaactattataattttcaatgcattcaatacataacttttcattaaaaacttactatt 9276589  T
Q  218 taaa 221  Q
    ||||    
T  9276588 taaa 9276585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 39558877 - 39558772
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| || ||| ||| ||||||||||| ||||||||     || || ||||||| ||||||||| |||||| |||||||| ||||||||||| |    
T  39558877 actctttaagtattccatatttagtaattattcatttaaaaattcaactgttacaatttccaatgcatttgatacacgacttttcaataaaaacttacta 39558778  T
Q  216 tttaaa 221  Q
    ||||||    
T  39558777 tttaaa 39558772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 208
Target Start/End: Complemental strand, 2918662 - 2918615
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaa 208  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||    
T  2918662 aactattataatttccaatgcatttaatacacaacttttcattaaaaa 2918615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 7719200 - 7719305
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| || ||| ||| |  |||||||||||||||||     ||||| ||||||| |||  ||| |||||||||||||||||||||||||||  |    
T  7719200 actctttaagcataccatatttaaaaattattcttttaaaaaatcaactattacaatttccaatatattcaatacacaacttttcattaaaaacttatta 7719299  T
Q  216 tttaaa 221  Q
    ||||||    
T  7719300 tttaaa 7719305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 40530545 - 40530448
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||||||  ||| || ||| |||||||||| |||||||||     ||||  ||||||||||| |||| ||||||||||| ||||||||||||||||    
T  40530545 actctttaaacatctcatatttagtaattattattttaaaaagttaactatcacaatttctaattcattcaatacacaactattcattaaaaacttac 40530448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 23117284 - 23117232
Alignment:
Q  169 caatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| ||| ||||||||||| || |||||||||||||||||| |||||||    
T  23117284 caatttccaatacatttaatacataatttttcattaaaaacttactatttaaa 23117232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 17692262 - 17692360
Alignment:
Q  125 tttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 218  Q
    |||||| |||| ||||| |||||||||||| |||||||     || || ||||||  |||||| ||| |||||||||||||||||||||| ||| ||||    
T  17692262 tttaagcatcctaaatttagtaattattctcttaaaaagtcaactgttacaattttcaatgcaattactacacaacttttcattaaaaacctactattt 17692360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 15720063 - 15720160
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||| ||| || ||||||| |  |||||||||||||||||     ||||| ||||||| |||| | ||||||||||||||||||| || |||||||    
T  15720063 actcttcaagcataccaaatttatcaattattcttttaaaaagtcaactattacaatttccaatgaacttaatacacaacttttcataaagaacttac 15720160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 8221179 - 8221223
Alignment:
Q  177 aatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||||| ||||||||| |||| ||||||||||||| |||||||    
T  8221179 aatgcattcaatacacaattttttattaaaaacttactatttaaa 8221223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 27123270 - 27123375
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| |||||| |||||||||||||     ||||| ||||||| |||||||| | ||||||||||||| ||||||||||||||    
T  27123270 actctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaatttccaatgcattaagtacacaacttttcgttaaaaacttacca 27123369  T
Q  216 tttaaa 221  Q
    ||||||    
T  27123370 tttaaa 27123375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 28770473 - 28770576
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||| | ||||||||||||||| ||     ||||||| ||||||| |||||||| |||||||||||||||||||||||||||| |    
T  28770473 actctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttacta 28770572  T
Q  216 ttta 219  Q
    ||||    
T  28770573 ttta 28770576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 44537337 - 44537442
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||| ||| ||||||||||||||||||||     |||||  |||||| | || || ||||||| ||||||||||||||||||||| |    
T  44537337 actctttaagcatcccatatttagtaattattcttttaaaaagtcaactattataatttccattgtatataatacataacttttcattaaaaacttacta 44537436  T
Q  216 tttaaa 221  Q
    ||||||    
T  44537437 tttaaa 44537442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 35496683 - 35496578
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||| ||||| ||||| |||  |||||||||     ||||| ||||||  |||||||| | ||||||| ||||||||||||||||||||    
T  35496683 actctttaagcatccaaaatttagtaactatatttttaaaaagtcaactattacaattttcaatgcattcattacacaatttttcattaaaaacttacca 35496584  T
Q  216 tttaaa 221  Q
    ||||||    
T  35496583 tttaaa 35496578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 25886211 - 25886271
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| ||||||  ||| ||||||||||||||||||||||  |||||||||||||||||    
T  25886211 aactattacaattttcaatacatttaatacacaacttttcatataaaacttaccatttaaa 25886271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 40753992 - 40753952
Alignment:
Q  181 catttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  40753992 catttaatacacaacttttcattaaaaacttatcatttaaa 40753952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 43234788 - 43234891
Alignment:
Q  123 tctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatt 217  Q
    |||||||| |||| | ||| ||||||||||||||||||||     ||||| ||||||| | | |||| |||||| |||||||||||||||| |||| |||    
T  43234788 tctttaagcatcctatatttagtaattattcttttaaaaaataaactattacaatttccattacattcaatacataacttttcattaaaaatttactatt 43234887  T
Q  218 taaa 221  Q
    ||||    
T  43234888 taaa 43234891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 42936025 - 42936093
Alignment:
Q  143 agtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaa 207  Q
    ||||||||||||||||||||     ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  42936025 agtaattattcttttaaaaaatcaactattacaatttc-aatgcatttaatacacaatttttcattaaaa 42936093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 43224197 - 43224092
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||| ||| | ||  ||||||||||||||||     || || ||||||| |||| || ||||||||||||||||||||||||||| | |    
T  43224197 actctttaagcatcctaaaattagatattattcttttaaaaagtcaactgttacaatttccaatgtatgtaatacacaacttttcattaaaaacttgcta 43224098  T
Q  216 tttaaa 221  Q
    ||||||    
T  43224097 tttaaa 43224092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 21727514 - 21727414
Alignment:
Q  123 tctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatt 217  Q
    |||||||| ||| | |||| ||||||||||||||||||||     ||||| ||||||| ||| |||| ||||||||| | || |||||||||||| ||||    
T  21727514 tctttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaatttccaatacattcaatacacaaatatttattaaaaacttatcatt 21727415  T
Q  218 t 218  Q
    |    
T  21727414 t 21727414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 28663224 - 28663144
Alignment:
Q  146 aattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||||||||||||     ||||||| ||||||  |||||||| ||||||||| |||||||||||| ||||| |||||||    
T  28663224 aattattcttttaaaaagtcaactattacaattttcaatgcattcaatacacaatttttcattaaaaccttactatttaaa 28663144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 48488227 - 48488183
Alignment:
Q  177 aatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||    
T  48488227 aatgcattgaatacataacttttcattaaaaacttatcatttaaa 48488183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 9719100 - 9718999
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattctttt-aaaaactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattta 219  Q
    |||||||||| || | ||||| || ||||||| |||| ||||||| || ||||||  |||| ||| | |||| ||||||||||  |||||||||||||||    
T  9719100 actctttaagcattctaaatttagaaattattattttcaaaaactgttacaattttcaatgtattcattacataacttttcatataaaacttaccattta 9719001  T
Q  220 aa 221  Q
    ||    
T  9719000 aa 9718999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 26239595 - 26239546
Alignment:
Q  172 tttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||| |||||||| |||| |||| |||||||||||||||||| |||||||    
T  26239595 tttccaatgcattgaatatacaatttttcattaaaaacttactatttaaa 26239546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 35731283 - 35731380
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||||||| || ||||||| |  || ||||||||||||||     ||||| ||||||| |||||| |||||||||||||||| || || |||||||    
T  35731283 actctttaagcataccaaatttaacaactattcttttaaaaagtcaactattacaatttccaatgcacttaatacacaactttttataaagaacttac 35731380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 39321092 - 39320995
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||||||| || ||||||| |  |||||||||||||||||     ||||| ||||||  |||| ||| |||||||||||||| || ||||||||||    
T  39321092 actctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaattttcaatgtattcaatacacaacttttaataaaaaacttac 39320995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 7653617 - 7653669
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||||  |||||| ||| |||| | ||||||||||||||||||||||||||    
T  7653617 aactattataatttccaattcattcattacacaacttttcattaaaaacttac 7653669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 19890300 - 19890203
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 212  Q
    |||| |||||| |||| ||||| ||||||||||||||||||||     ||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  19890300 tactatttaagcatcctaaatttagtaattattcttttaaaaagtcaactattacaatttccaatgcatttaatacacaacttttcattaaaaactta 19890203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 9449063 - 9448959
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccat 216  Q
    |||||||||| | | |||||| ||||||||||||||||||||    |||||  |||||  ||| |||| |||||||||||||||||||||||||||||||    
T  9449063 actctttaagcaactcaaatttagtaattattcttttaaaaatcaactattataattttcaatacattcaatacacaacttttcattaaaaacttaccat 9448964  T
Q  217 ttaaa 221  Q
    |||||    
T  9448963 ttaaa 9448959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 1334994 - 1334889
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| | |||||||||||| |||||     ||||| ||||||| |||||||| |||| |||| ||||||||||||||||| ||    
T  1334994 actctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaatttccaatgcattcaatatacaatttttcattaaaaacttatca 1334895  T
Q  216 tttaaa 221  Q
    ||||||    
T  1334894 tttaaa 1334889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 31017419 - 31017313
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 214  Q
    ||||||| ||| |||||||||| |||||||||||||| ||||| |     |||  |||||  |||||||||||||||||||||||||||||||||||  |    
T  31017419 tactcttcaagtatcccaaatttagtaattattctttaaaaaagtcaaatattttaattttcaatgcatttaatacacaacttttcattaaaaacttttc 31017320  T
Q  215 atttaaa 221  Q
    |||||||    
T  31017319 atttaaa 31017313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 14295626 - 14295707
Alignment:
Q  123 tctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaactttt 199  Q
    ||||||||||||||||||| ||||||||||||||||||     ||||||| ||||||  |||||||| ||||||||||||||    
T  14295626 tctttaagaatcccaaatttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacacaactttt 14295707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 34904898 - 34904793
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| ||| || ||| ||||||||||||||||||     ||||||| |||||| ||||| |||||||||| || |||||||||| ||||||| |    
T  34904898 actctttaagtatctcatatttagtaattattcttttaaaaaatcaactattacaatttttaatgaatttaatacaaaatttttcattaataacttacaa 34904799  T
Q  216 tttaaa 221  Q
    ||||||    
T  34904798 tttaaa 34904793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 31452454 - 31452352
Alignment:
Q  123 tctttaagaatcccaaattaagtaattattcttttaaaaact-----attgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatt 217  Q
    |||||||  ||||||| || |||||||||||||||||||| |     ||| ||||||  |||||||| |||||||||||||| ||||||||||||| |||    
T  31452454 tctttaaacatcccaagtttagtaattattcttttaaaaagtcaacaattacaattttcaatgcattcaatacacaactttt-attaaaaacttactatt 31452356  T
Q  218 taaa 221  Q
    ||||    
T  31452355 taaa 31452352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 218
Target Start/End: Complemental strand, 38533975 - 38533877
Alignment:
Q  124 ctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 218  Q
    ||||||| ||| |||||| |||||||||| |||||||     |||||||| ||||||||||||||| ||||||||| ||||| ||| |||||||| ||||    
T  38533975 ctttaagcatctcaaatttagtaattatt-ttttaaatagtcaactattgtaatttctaatgcattcaatacacaatttttctttacaaacttactattt 38533877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 218
Target Start/End: Complemental strand, 38533411 - 38533354
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 218  Q
    |||||||| ||||||||||||||| ||||||||| ||||| ||| ||| |||| ||||    
T  38533411 aactattgtaatttctaatgcattcaatacacaatttttctttacaaaattactattt 38533354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 37993119 - 37993179
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| ||||||  ||||||||||||||| || |||| |||||||| |||| |||||||    
T  37993119 aactattacaattttcaatgcatttaatacataattttttattaaaaatttactatttaaa 37993179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 2864139 - 2864243
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaa----actattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccat 216  Q
    |||||||||  |||||| ||| || ||||||||||| ||||    |||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||    
T  2864139 actctttaaacatcccatatttaggaattattctttaaaaagtcaactattacaatttccaatgcattcaatacacaacttttcattaaaaacttactat 2864238  T
Q  217 ttaaa 221  Q
    |||||    
T  2864239 ttaaa 2864243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 47187931 - 47187829
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| |||||||||| ||||||||||| ||||||||     |||||  |||||| |||||||| |||||| || ||||||||||||||||||||    
T  47187931 actctttaagcatcccaaatttagtaattattcatttaaaaaatcaactattataatttccaatgcattcaatacataatttttcattaaaaacttacca 47187832  T
Q  216 ttt 218  Q
    |||    
T  47187831 ttt 47187829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 31889203 - 31889264
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaac-ttttcattaaaaacttaccatttaaa 221  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31889203 aactattacgatttctaatgcatttaatacacaactttttcattaaaaacttaccatttaaa 31889264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 43397080 - 43397020
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||||  |||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  43397080 aactattataatttccaatgcatttaatacacaacttttcattaaaaacttactatttaaa 43397020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 48022464 - 48022358
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 214  Q
    ||||||||||| |||||| ||| |||||||||| |||||||||     ||||||||||||  |||||||| |||||| |  |||| |||||||||||||     
T  48022464 tactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaattttcaatgcattcaatacatatttttttattaaaaacttact 48022365  T
Q  215 atttaaa 221  Q
    |||||||    
T  48022364 atttaaa 48022358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 38491217 - 38491309
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaa 208  Q
    ||||||| ||||||||||||| |||||||||| | |||||||     ||||| ||||||  |||||||| ||||||||| |||||||||||||    
T  38491217 actctttcagaatcccaaatttagtaattattatgttaaaaagtcaactattacaatttacaatgcattcaatacacaatttttcattaaaaa 38491309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 44829272 - 44829359
Alignment:
Q  125 tttaagaatcccaaattaagtaattattcttttaaaa-----actattgcaatttctaatgcatttaatacacaacttttcattaaaa 207  Q
    |||||| |||||||||| |||||||||||||| ||||     |||||| |||||| |||| |||| |||||||||||||| |||||||    
T  44829272 tttaagcatcccaaatttagtaattattctttaaaaaggtcaactattacaatttttaatacattcaatacacaactttttattaaaa 44829359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 39150578 - 39150675
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||||||| |||| ||||| ||||||||||||| ||||     ||||||| ||||||  |||||||| |||||| || |||||||||||| |||||    
T  39150578 actctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaatttacaatgcattcaatacataaattttcattaaaatcttac 39150675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 34409784 - 34409834
Alignment:
Q  170 aatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||||||||    
T  34409784 aatttccaatgcattcaatacacat-ttttcattaaaaacttaccatttaaa 34409834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 8794411 - 8794453
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaa 162  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||    
T  8794411 tactctttaagcatcctaaatttagtaattattcttttaaaaa 8794453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 213
Target Start/End: Complemental strand, 38748832 - 38748734
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    ||||||||||| || ||||||| || |||||||||||||||||     |||||  |||||  |||||| | ||||||||||||||||| || |||||||    
T  38748832 tactctttaagcataccaaatttagaaattattcttttaaaaagtcaactattataattttcaatgcactcaatacacaacttttcataaataacttac 38748734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 2995081 - 2995040
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa 162  Q
    ||||||||||||||| ||||| |||||||||| |||||||||    
T  2995081 actctttaagaatccaaaatttagtaattattattttaaaaa 2995040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 32562463 - 32562359
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    ||||||||||||||  ||||| |||||||||| |||||||     ||||||| ||||||  |||||| | ||||||||| |||| | ||||||||||| |    
T  32562463 actctttaagaatctaaaatttagtaattattattttaaaaattcaactattacaattttcaatgcagtgaatacacaatttttta-taaaaacttacta 32562365  T
Q  216 tttaaa 221  Q
    ||||||    
T  32562364 tttaaa 32562359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 33791850 - 33791809
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaa 161  Q
    ||||||||||| || | |||||||||||||||||||||||||    
T  33791850 tactctttaagtatgctaaattaagtaattattcttttaaaa 33791809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 39973888 - 39973928
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaa 161  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  39973888 actctttaagcatgctaaattaagtaattattcttttaaaa 39973928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 42573879 - 42573839
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaa 161  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  42573879 actctttaagcatgctaaattaagtaattattcttttaaaa 42573839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 29083988 - 29083908
Alignment:
Q  143 agtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccattt 218  Q
    ||||||||||||||||||||     ||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||    
T  29083988 agtaattattcttttaaaaagttaactattacaatttttaatgcatttaatacacaacttttcaataaaaacttactattt 29083908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 219
Target Start/End: Complemental strand, 42846116 - 42846012
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaat-gcatttaatacacaacttttcattaaaaacttacc 214  Q
    |||||||||| |||| ||||| |||||||||||||| |||||     ||||| ||||||  ||| ||||| ||||||||||||||||||||||||||| |    
T  42846116 actctttaagcatcctaaatttagtaattattctttgaaaaagtcaactatttcaattttcaattgcattcaatacacaacttttcattaaaaacttatc 42846017  T
Q  215 attta 219  Q
    |||||    
T  42846016 attta 42846012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 49362453 - 49362368
Alignment:
Q  132 atcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 212  Q
    |||||||||| | ||||||||||||||||||     ||||| ||||||| |||| |||||||| |||| |||| ||||||||||||    
T  49362453 atcccaaatttaataattattcttttaaaaagttaactattacaatttccaatgtatttaatatacaattttttattaaaaactta 49362368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 40673475 - 40673535
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| |||||||||||  ||| ||||||| ||||||| ||||||||||| ||||||||    
T  40673475 aactattacaatttctaatatattcaatacactacttttctttaaaaacttatcatttaaa 40673535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 42939873 - 42939925
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    ||||||||||||||  |||| ||||||||||||| |||||||| |||||||||    
T  42939873 aactattgcaattttcaatgaatttaatacacaatttttcatttaaaacttac 42939925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 52638268 - 52638173
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaactta 212  Q
    ||||||||||||||| ||||| |||||||||| |||||||     ||||||| ||||||| |||||| | ||||||||| |||| | ||||||||||    
T  52638268 actctttaagaatccaaaatttagtaattattattttaaaaagccaactattacaatttccaatgcagtgaatacacaatttttta-taaaaactta 52638173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 26143164 - 26143199
Alignment:
Q  186 aatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26143164 aatacacaaattttcattaaaaacttaccatttaaa 26143199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 51351327 - 51351370
Alignment:
Q  170 aatttctaatgcatttaatacacaacttttcattaaaaacttac 213  Q
    |||||| ||| |||||||||||||| ||||||||||||||||||    
T  51351327 aatttccaatacatttaatacacaatttttcattaaaaacttac 51351370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 48180281 - 48180176
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacca 215  Q
    |||||||||| ||||| |||| |  |||||||||||||||     ||||||| ||||||| ||||||||   ||| |||| |||||| |||||||||| |    
T  48180281 actctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaatttccaatgcattggttacccaacatttcataaaaaacttacta 48180182  T
Q  216 tttaaa 221  Q
    ||||||    
T  48180181 tttaaa 48180176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 26900088 - 26900028
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| ||||||  |||||||||| |||| ||||||||||  |||| ||||||||||||    
T  26900088 aactattacaattttcaatgcatttattacataacttttcatataaaatttaccatttaaa 26900028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 1841003 - 1841084
Alignment:
Q  145 taattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||||||||||||||     ||||| ||||||| |||||||| |||||||||||||| |||||||||||| ||||||||    
T  1841003 taattattcttttaaaaaatcaactattacaatttccaatgcattcaatacacaacttttaattaaaaacttatcatttaaa 1841084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 31855095 - 31855155
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| ||||||| |||||||| |||| |||| |||||||||||||||||| |||||||    
T  31855095 aactattacaatttccaatgcattcaatatacaatttttcattaaaaacttactatttaaa 31855155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 2692540 - 2692449
Alignment:
Q  121 actctttaagaatcccaaattaagtaattattcttttaaa-----aactattgcaatttctaatgcatttaatacacaacttttcattaaaa 207  Q
    ||||||||||||||| ||||| |||||||||| |||||||     ||||||| ||||||| |||| | | |||||||||||||| |||||||    
T  2692540 actctttaagaatccaaaatttagtaattattattttaaaaagtcaactattacaatttccaatgaagtgaatacacaactttttattaaaa 2692449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 17215777 - 17215688
Alignment:
Q  137 aaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||| |||||||||| |||||||||     ||||| ||||||  |||||||| |||| |||| |||| |||||||||||||||||||||    
T  17215777 aaatttagtaattatttttttaaaaagtcaactattacaattttcaatgcattcaataaacaattttttattaaaaacttaccatttaaa 17215688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 32823721 - 32823768
Alignment:
Q  164 tattgcaatttctaatgcatttaatacacaacttttcattaaaaactt 211  Q
    |||| ||||||  |||||||| ||||||||||||||||||||||||||    
T  32823721 tattacaattttcaatgcattcaatacacaacttttcattaaaaactt 32823768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 34232020 - 34231970
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaactt 211  Q
    |||| |||||||||  |||| |||||||||||||||||||||||| |||||    
T  34232020 aactgttgcaattttcaatgtatttaatacacaacttttcattaagaactt 34231970  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 2864917 - 2864978
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaa-acttaccatttaaa 221  Q
    ||||||| ||||||  |||||||| ||||||||| ||||||| |||| ||||||||||||||    
T  2864917 aactattacaatttacaatgcattaaatacacaatttttcatcaaaaaacttaccatttaaa 2864978  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 9762852 - 9762904
Alignment:
Q  170 aatttctaatgcatttaatacacaacttttca-ttaaaaacttaccatttaaa 221  Q
    |||||||||| |||| | |||||||||||||| ||||||| ||||||||||||    
T  9762852 aatttctaatacattcagtacacaacttttcatttaaaaatttaccatttaaa 9762904  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 24103843 - 24103783
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| |||||| ||||| ||||||||||||| |||| |||||||| |||  |||||||    
T  24103843 aactattacaatttttaatgaatttaatacacaatttttaattaaaaatttattatttaaa 24103783  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 30801798 - 30801842
Alignment:
Q  177 aatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    |||||||| |||||||||||||| ||||||||||| | |||||||    
T  30801798 aatgcattcaatacacaacttttaattaaaaacttgctatttaaa 30801842  T

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Target: scaffold0268 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 20313 - 20254
Alignment:
Q  161 aactattgcaatttctaatgcatttaatacacaacttttcattaaaaacttaccatttaaa 221  Q
    ||||||| ||||||| |||||||| |||||||||||||||| |||||||||| ||||||||    
T  20313 aactattacaatttcaaatgcattaaatacacaacttttca-taaaaacttatcatttaaa 20254  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 221
Target Start/End: Complemental strand, 62636 - 62530
Alignment:
Q  120 tactctttaagaatcccaaattaagtaattattcttttaaaaa-----ctattgcaatttctaatgcatttaatacacaacttttcattaaaaacttacc 214  Q
    ||||||||||| ||| || ||| ||||||||||||||||||||     ||||| | ||||  |||||||| |||||| || |||| |||||||||||||     
T  62636 tactctttaagcatctcatatttagtaattattcttttaaaaagtcaactattacgattttcaatgcattcaatacataattttttattaaaaacttact 62537  T
Q  215 atttaaa 221  Q
    |||||||    
T  62536 atttaaa 62530  T

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