View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2371_low_94 (Length: 235)
Name: NF2371_low_94
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_94 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 43600472 - 43600674
Alignment:
| Q |
1 |
ctcctacatgtataattagcctttccttccttcgatcacttatagttaacaaccaattttcttctttcaattttcctggaaaaatgattgaaatgaaggc |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43600472 |
ctcctacatgtataattaacctttccttccttcgatcacttatagttaacaaccaattttcttctttcaattttcctggaaaaatgattgaaatgaaggc |
43600571 |
T |
|
| Q |
101 |
aatgagatttttctctttttcaattctcagtttggtactctttgttatctctgaagctcacaacttttctccttctccaacacccgcacctgcacctgct |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43600572 |
attgagatttttctctttttcaattctcagtttggtactctttgctatctctgaagctcacgacttttctccttctccaacacctgcacctgcacctgct |
43600671 |
T |
|
| Q |
201 |
cct |
203 |
Q |
| |
|
||| |
|
|
| T |
43600672 |
cct |
43600674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University