View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_97 (Length: 230)
Name: NF2371_low_97
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_97 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 26314387 - 26314191
Alignment:
| Q |
22 |
atgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaagagcaagaaa |
121 |
Q |
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| T |
26314387 |
atgccaaggaagaattttcctgtatgggacttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaagagcaagaaa |
26314288 |
T |
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| Q |
122 |
gagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattcatttcaactgaattcaacatgcatgctttatcgttttcttctca |
218 |
Q |
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| T |
26314287 |
gagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattcatttcaactgaattcaacatgcatactccatcgttttctgctca |
26314191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 43109336 - 43109167
Alignment:
| Q |
22 |
atgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaagagcaagaaa |
121 |
Q |
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| T |
43109336 |
atgccaaggaagaattttcctgtgtgggatttaatttgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggtgaagatcaagaaa |
43109237 |
T |
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| Q |
122 |
gagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattcatttcaactgaattcaa |
191 |
Q |
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| T |
43109236 |
gggttttgcatcaattaatcaacaaaatatcaatggaagaaactgctgaattcatttcaactgaattcaa |
43109167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 5251840 - 5251999
Alignment:
| Q |
22 |
atgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaagagcaagaaa |
121 |
Q |
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| T |
5251840 |
atgccaaggaagaattttccagtgtgggatttgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaagagcttgaac |
5251939 |
T |
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| Q |
122 |
gagttttgcatcaattaatcaacaaaatttcaatggaagaaagtgctcaattcatttcaa |
181 |
Q |
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| T |
5251940 |
aaattttgattcaattgatcaacaaaattatcattgaggaaaatgctcaattcatttcaa |
5251999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 5269684 - 5269775
Alignment:
| Q |
22 |
atgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaaga |
113 |
Q |
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| T |
5269684 |
atgccaaggaagaattttccagtgtgggatttgatatgcaaagatccttcacttgttaaggctgaaattcatggttggagtgatggagaaga |
5269775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 113
Target Start/End: Complemental strand, 5275978 - 5275887
Alignment:
| Q |
22 |
atgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaaga |
113 |
Q |
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| T |
5275978 |
atgccaaggaagaattttccagtgtgggatttgatatgcaaagatccttcacttgtcaaagctgaaattcatggttggagtgatggagaaga |
5275887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 5271989 - 5271861
Alignment:
| Q |
22 |
atgccaaggaagaattttcctgtatgggccttgatatgcaaagatccttcacttgttaaagctaaaatttatgaatggagtgatggagaagagcaagaaa |
121 |
Q |
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|||||||||||||||||||| || |||| |||||||||||||| |||||||||||||| ||| ||||| ||| ||| ||||||||||||||| ||| |
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| T |
5271989 |
atgccaaggaagaattttccagtgtgggatttgatatgcaaagacccttcacttgttaaggctgaaattcatggttggtgtgatggagaagagcttgaac |
5271890 |
T |
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| Q |
122 |
gagttttgcatcaattaatcaacaaaatt |
150 |
Q |
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| T |
5271889 |
aaattttgattcaattgatcaacaaaatt |
5271861 |
T |
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