View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2371_low_98 (Length: 229)
Name: NF2371_low_98
Description: NF2371
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2371_low_98 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 51273926 - 51274120
Alignment:
| Q |
1 |
tgcaagaagaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcaca |
100 |
Q |
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| T |
51273926 |
tgcaagaaaaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcaca |
51274025 |
T |
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| Q |
101 |
ataaacgtgaccgtgtactcgaaggccttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
195 |
Q |
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| T |
51274026 |
ataaacgtgaccgtgtactagaaggctttgtttgtgaaccttattatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 14907955 - 14908094
Alignment:
| Q |
1 |
tgcaagaagaccacacgtggtagagtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcaca |
100 |
Q |
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| T |
14907955 |
tgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcctcacaaaagataggatcaaatttccactccctccaccgctacgaaccagtcata |
14908054 |
T |
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| Q |
101 |
ataaacgtgaccgtgtactcgaaggccttgtttgtgaacc |
140 |
Q |
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| T |
14908055 |
atgagcgtgaccgtgtacatgaaggctttgtttgcgaacc |
14908094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
41 |
acatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtcacaa-taaacgtgaccgtgtactcgaaggccttgtttgtgaac |
139 |
Q |
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|||||||| | |||||||||||||||||||||||||||||| || || ||||||||| || ||||||||||||||||||||||||| | ||||| |||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
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| Q |
140 |
ctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
195 |
Q |
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|||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
5051299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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