View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2372_high_1 (Length: 262)
Name: NF2372_high_1
Description: NF2372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2372_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 13509138 - 13509376
Alignment:
| Q |
7 |
tagattattcttttggtgatattattttgttctaatcagagtatcggtcgggaaataagtatagtttagtcaaaattatcttattggagattcaaattct |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13509138 |
tagaatattcttttggtgatattattttgttctaatcggagtatcggtcgagaaataagtatagtttggtcaaaattatcttattggagattcaaattct |
13509237 |
T |
|
| Q |
107 |
cccgaacaatttgtctttgtcaattaactatttaaacacaattgcttgattacctggaacttgattattttaaccaatgatgtgcagatggtgaaacaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13509238 |
cccgaacaatttgtctttgtcaattaactatttaaacacaattgcttgattaactggaacttgattattttaaccaatgatgtgcagatggtgaaacaaa |
13509337 |
T |
|
| Q |
207 |
gtatgtgttgcacaaagtggagttagtagatgatgttaa |
245 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13509338 |
gtatgtgttgcacaaagtggacttagtagatgatgttaa |
13509376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 13491990 - 13492054
Alignment:
| Q |
181 |
caatgatgtgcagatggtgaaacaaagtatgtgttgcacaaagtggagttagtagatgatgttaa |
245 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
13491990 |
caattatgcgcaggtggtgaaacaaagtatgatttgcacaaagtggacttagtagatgatgttaa |
13492054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 13485560 - 13485615
Alignment:
| Q |
190 |
gcagatggtgaaacaaagtatgtgttgcacaaagtggagttagtagatgatgttaa |
245 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
13485560 |
gcaggtggtgaaacaaagtatgatttgcacaaagtggacttagtagatgatgttaa |
13485615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 13501275 - 13501327
Alignment:
| Q |
189 |
tgcagatggtgaaacaaagtatgtgttgcacaaagtggagttagtagatgatg |
241 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
13501275 |
tgcagatggtgaaaccaagtatgatttacacaaagtggagttagtagatgatg |
13501327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 13515078 - 13515130
Alignment:
| Q |
189 |
tgcagatggtgaaacaaagtatgtgttgcacaaagtggagttagtagatgatg |
241 |
Q |
| |
|
|||||||||||| || ||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
13515078 |
tgcagatggtgagaccaagcatgtgttacacaaagtggagttagtagatgatg |
13515130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University