View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2372_low_2 (Length: 274)
Name: NF2372_low_2
Description: NF2372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2372_low_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 9938227 - 9938500
Alignment:
| Q |
1 |
cgtcaaacatgctcatttcagaacattagcttatactcaaactgaatcagatatagacctcataggtt-cgatatctgctggagcgagtgttgtgttatg |
99 |
Q |
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| T |
9938227 |
cgtcaaacatgctcatttcagaacattagcttatactcagactgaatcagatatggacctcataggtttcgatatctgctggagcgagtgttgtgttatg |
9938326 |
T |
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| Q |
100 |
taaaagtgtattctcattattgaatcatggtttgatacaaaggtcctatatatagcaaactgagatacacaacaaactgagttacttgagagctaagtaa |
199 |
Q |
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| T |
9938327 |
taaaagtgtattctcattattgaattatggtttgatacaaagctcctatatatagcaaactgag-tacacaacaaactgagttacttgagagctaagtaa |
9938425 |
T |
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| Q |
200 |
cttccacaactaacttctaactaacttgtaacaagcatatcctaacaatcactctcctaaactgaaccttatgac |
274 |
Q |
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| T |
9938426 |
cttccacaactaacttctaactaacttgtaacaagcatatcctaacaattactctcctaaactgaaccttatgac |
9938500 |
T |
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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 30288366 - 30288244
Alignment:
| Q |
93 |
tgttatgtaaaagtgtattctcattattgaatcatggtttgatacaaaggtcctatatatagcaaactgagatacacaacaaa-ctgagttacttgagag |
191 |
Q |
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||||| |||||| | ||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||| |||||||||||| || |
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| T |
30288366 |
tgttaggtaaaaatttattctcattattgaat-atggtttggtacaagactgctatatatagcaaactgagatacactacaaaactgagttacttgcaag |
30288268 |
T |
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| Q |
192 |
ctaagtaacttccacaactaactt |
215 |
Q |
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| T |
30288267 |
ctaagtaacttctaaaactaactt |
30288244 |
T |
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