View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2372_low_4 (Length: 248)

Name: NF2372_low_4
Description: NF2372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2372_low_4
NF2372_low_4
[»] chr2 (7 HSPs)
chr2 (1-235)||(29457267-29457501)
chr2 (13-235)||(43566062-43566284)
chr2 (1-150)||(7571906-7572067)
chr2 (21-150)||(16666521-16666662)
chr2 (160-244)||(7572100-7572177)
chr2 (160-244)||(16666695-16666772)
chr2 (1-33)||(33355611-33355643)
[»] chr8 (9 HSPs)
chr8 (1-235)||(916959-917185)
chr8 (1-150)||(10188394-10188539)
chr8 (52-150)||(4140308-4140406)
chr8 (150-244)||(10188276-10188370)
chr8 (1-150)||(28845088-28845253)
chr8 (150-244)||(4140190-4140284)
chr8 (1-69)||(4140405-4140473)
chr8 (159-247)||(28844975-28845056)
chr8 (163-232)||(5369086-5369155)
[»] chr5 (3 HSPs)
chr5 (1-244)||(37299894-37300160)
chr5 (1-150)||(36993281-36993426)
chr5 (192-244)||(36993171-36993223)
[»] chr7 (9 HSPs)
chr7 (1-150)||(39064993-39065142)
chr7 (1-150)||(5766252-5766397)
chr7 (30-150)||(47231804-47231920)
chr7 (1-150)||(25417390-25417551)
chr7 (1-150)||(5433377-5433535)
chr7 (160-244)||(25417584-25417661)
chr7 (160-244)||(39065175-39065252)
chr7 (192-244)||(5766455-5766507)
chr7 (155-244)||(47231948-47232030)
[»] chr4 (13 HSPs)
chr4 (1-244)||(34735480-34735749)
chr4 (1-150)||(46094538-46094683)
chr4 (2-137)||(20038789-20038920)
chr4 (52-150)||(53828709-53828807)
chr4 (150-244)||(21630907-21631001)
chr4 (150-244)||(21804797-21804891)
chr4 (1-150)||(2502817-2502978)
chr4 (1-150)||(21630718-21630883)
chr4 (160-244)||(2503011-2503088)
chr4 (15-69)||(53828640-53828694)
chr4 (153-235)||(53828833-53828908)
chr4 (192-244)||(46094428-46094480)
chr4 (163-216)||(20037895-20037948)
[»] chr3 (6 HSPs)
chr3 (1-150)||(35872399-35872544)
chr3 (52-150)||(48268299-48268397)
chr3 (1-150)||(52351892-52352053)
chr3 (153-244)||(48268189-48268273)
chr3 (160-244)||(52351782-52351859)
chr3 (193-235)||(35872298-35872340)
[»] chr6 (4 HSPs)
chr6 (1-150)||(18884609-18884760)
chr6 (1-150)||(13431268-13431429)
chr6 (165-226)||(18884510-18884571)
chr6 (160-244)||(13431462-13431539)
[»] chr1 (8 HSPs)
chr1 (1-150)||(39625499-39625650)
chr1 (52-235)||(22910671-22910877)
chr1 (1-150)||(13788395-13788556)
chr1 (1-150)||(25805586-25805747)
chr1 (165-244)||(39625382-39625461)
chr1 (1-69)||(22910601-22910668)
chr1 (160-244)||(13788285-13788362)
chr1 (160-244)||(25805780-25805857)
[»] scaffold0084 (2 HSPs)
scaffold0084 (11-126)||(13643-13762)
scaffold0084 (166-235)||(13512-13580)
[»] scaffold0516 (2 HSPs)
scaffold0516 (166-235)||(4280-4349)
scaffold0516 (23-126)||(4411-4522)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29457501 - 29457267
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || ||||||||    
T  29457501 acaatcctagcattagagtgagtcaagtttagtttacaaagagaataagatatagatagataaatagatgctccaaagatgtgacacctatcttgttcct 29457402  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgcttagcagtttcagtctccctttatttacttgatctctaatacagtgattcct 200  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29457401 cagctcctaaaacttgtcattcttcacaaactttgttggaacgtctacttagcggtttcagtctccctttatttacttgatctctaatacagtgattcct 29457302  T
Q  201 tgtctcaatgtgtttatggtaaaatgtcacaatat 235  Q
    ||||||| |||||||||||||||||||||||||||    
T  29457301 tgtctcattgtgtttatggtaaaatgtcacaatat 29457267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 43566284 - 43566062
Alignment:
Q  13 ttagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcctcagctcctaaaa 112  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||    
T  43566284 ttagagtgagtcaaatttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgtgacacctatcttgttcctcagctcctaaaa 43566185  T
Q  113 tttgtcatgcttcacaaactttgttggaatgtctgcttagcagtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtg 212  Q
     ||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  43566184 cttgtcattcttcacaaactttgttggaacgtctgcttagcggtttcattctccctttatttacttgatctctaatagagtgattccttgtctcattgtg 43566085  T
Q  213 tttatggtaaaatgtcacaatat 235  Q
    |||||||||||||||||||||||    
T  43566084 tttatggtaaaatgtcacaatat 43566062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7571906 - 7572067
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatag------------atagatagatagatgctccaaagatgcgacacc 88  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||||||||||            |||||||| |||||||||||||||||||||||     
T  7571906 acaatcctagcattcgagatagtcaagtttagtttacaaagagaataagatatagatagatagatagatagataggtagatgctccaaagatgcgacact 7572005  T
Q  89 catattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||| |||||||| | ||||| ||| ||||||||||||||||| |||| || || ||||||||    
T  7572006 catcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgctt 7572067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 16666521 - 16666662
Alignment:
Q  21 agtcaagtttagtttacaaagagaataagatatag------------atagatagatagatgctccaaagatgcgacacccatattgttcctcagctcct 108  Q
    |||||||||||||||||||||||||||||||||||            |||||||| ||||||||||||||||||||||| ||| |||||||| | |||||    
T  16666521 agtcaagtttagtttacaaagagaataagatatagatagatagatagatagataggtagatgctccaaagatgcgacactcatcttgttccttatctcct 16666620  T
Q  109 aaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
     ||| ||||||||||||||||| |||| || || ||||||||    
T  16666621 taaacttgtcatgcttcacaaattttgctgaaacgtctgctt 16666662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 7572100 - 7572177
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  7572100 agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 7572177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 16666695 - 16666772
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  16666695 agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 16666772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33355611 - 33355643
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagt 33  Q
    ||||||||||||||||| |||||||||||||||    
T  33355611 acaatcctaacattagaatgagtcaagtttagt 33355643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 916959 - 917185
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||||||  |||||||    
T  916959 acaatcctaacattagagtgagtcaagtttagtttacaaagaaaataagatatagatagatagatagat-------agatgcgacacccatcctgttcct 917051  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgcttagcagtttcagtctccctttatttacttgatctctaatacagtgattcct 200  Q
    |||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| |    
T  917052 cagctcctaaaacttgtcatgcttcacaaactttgttggac-gtctgcttagcggttttagtctccctttatttacttgatctctaatatagtgattctt 917150  T
Q  201 tgtctcaatgtgtttatggtaaaatgtcacaatat 235  Q
    ||||||||||| |||||||||||||||||||||||    
T  917151 tgtctcaatgtatttatggtaaaatgtcacaatat 917185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 10188539 - 10188394
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    ||||||||  |||||||||||||||||||||||||||| |||||| |||||||||||||||||||    || ||||||||||||||||||| ||||||||    
T  10188539 acaatccttgcattagagtgagtcaagtttagtttacatagagaagaagatatagatagatagat----gccccaaagatgcgacacccatcttgttcct 10188444  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||||||| ||| ||||||||||||||||| |||||||||| ||| ||||    
T  10188443 cagctcctcaaacttgtcatgcttcacaaattttgttggaaagtccgctt 10188394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 4140406 - 4140308
Alignment:
Q  52 atagatagatagatagatgctccaaagatgcgacacccatattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| | |||||||| ||||||||    
T  4140406 atagatagatagatagatgccccaaagatgcgacacccatcttgttcctcagctcctcaaacttgtcatgcttcacaaattatgttggaaagtctgctt 4140308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 10188370 - 10188276
Alignment:
Q  150 tagcagtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| || |||||    
T  10188370 tagcggtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtctacgctaaaatgtcacaatatttttttaga 10188276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 28845253 - 28845088
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagat----------------gctccaaagatgcga 84  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||||| |||||                |||||||||||||||    
T  28845253 acaatcctagcattagagatagtcaagtttagtttacaaagagaagaagatatagatagataggtagatagataggtaggtagatgctccaaagatgcga 28845154  T
Q  85 cacccatattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||| ||| |||||||||||||||| ||| ||||||||||||||||| |||| ||||| ||||||||    
T  28845153 cactcatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt 28845088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 4140284 - 4140190
Alignment:
Q  150 tagcagtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || | |||||||||||||||| || |||||    
T  4140284 tagcggtttcagtctccctttatttacttgatctctaatacagtgattcattgtctcgatgtgtctacgctaaaatgtcacaatatttttttaga 4140190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4140473 - 4140405
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagat 69  Q
    ||||||||  |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  4140473 acaatccttgcattagagtgagtcaagtttagtttacatagagaagaagatatagatagatagatagat 4140405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 247
Target Start/End: Complemental strand, 28845056 - 28844975
Alignment:
Q  159 cagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttagacat 247  Q
    |||||||| |||||||||||||||||       ||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||    
T  28845056 cagtctccttttatttacttgatctc-------gtgattcattgtctcaatgtgtttacggtaaaatgtcacaatatttttttagacat 28844975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 5369155 - 5369086
Alignment:
Q  163 ctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaa 232  Q
    |||||||| |||  ||||||||||||| ||||||||||||||| |||||||||| |||||||| ||||||    
T  5369155 ctccctttgtttgattgatctctaatatagtgattccttgtcttaatgtgtttacggtaaaatttcacaa 5369086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 37299894 - 37300160
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    ||||||||| ||||||||| |||||| |||| ||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||| ||||||||    
T  37299894 acaatcctagcattagagttagtcaaatttaatttacaaagagaagaaaatatagatagatagatatatactccaaagatgcgacacccatcttgttcct 37299993  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgct-------tagcagt----------------ttcagtctccctttatttact 177  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||||||       |||||||                |||||||||||||||||||||    
T  37299994 cagctcctcaaacttgtcatgcttcacaaattttgttggaatgtctgcttcatatatagcagtagggcaatgtagcagtttcagtctccctttatttact 37300093  T
Q  178 tgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || |||||    
T  37300094 tgatctctaatacagtgattccttgtctcaatgtgtttacgataaaatgtcacaatatttttttaga 37300160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 36993426 - 36993281
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  36993426 acaatcctagcattagagatagtcaagtttagtttacaaagagaagaagatatagatagatagat----gctccaaagatgcgacacccatcttgttcct 36993331  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||||||| ||| ||||||||||||||||| |||| ||||| ||||||||    
T  36993330 cagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt 36993281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 36993223 - 36993171
Alignment:
Q  192 gtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||||||||||||||| |||||||| |||||||||||||||||| || |||||    
T  36993223 gtgattccttgtctcactgtgtttacggtaaaatgtcacaatatttttttaga 36993171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 39064993 - 39065142
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39064993 acaatcctagcattagagatagtcaagtttagtttacaaagagaagaagatatagatagatagatagatgctccaaagatgcgacacccatcttgttcct 39065092  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||||||| ||| ||||||||||||||||| |||| ||||| ||||||||    
T  39065093 cagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt 39065142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 5766252 - 5766397
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||    |||||||||||||||||||||||||||||||| ||||||||    
T  5766252 acaatcctagcattagagatagtcaagtttagtttacaaagagaagaagatatag----atagatagatgctccaaagatgcgacacccatcttgttcct 5766347  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||||||| ||| ||||||||||||||||| |||| ||||| ||||||||    
T  5766348 cagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt 5766397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 47231804 - 47231920
Alignment:
Q  30 tagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcctcagctcctaaaatttgtcatgcttcacaa 129  Q
    |||||||||||||||| |||||||||    |||||||||||||||||| ||||||||||||| |||||||||||||||| ||| ||| ||||||||||||    
T  47231804 tagtttacaaagagaagaagatatag----atagatagatgctccaaatatgcgacacccatcttgttcctcagctccttaaacttgccatgcttcacaa 47231899  T
Q  130 actttgttggaatgtctgctt 150  Q
    | |||||||||| ||||||||    
T  47231900 attttgttggaacgtctgctt 47231920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 25417390 - 25417551
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatag------------atagatagatagatgctccaaagatgcgacacc 88  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||||||||||            |||||||| |||||||||||||||||||||||     
T  25417390 acaatcctagcattcgagatagtcaagtttagtttacaaagagaataagatatagatagatagatagatagataggtagatgctccaaagatgcgacact 25417489  T
Q  89 catattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||| |||||||| | ||||| ||| ||||||||||||||||| |||| || || ||||||||    
T  25417490 catcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgctt 25417551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 5433535 - 5433377
Alignment:
Q  1 acaatcctaa-cattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagat--------agatgctccaaagatgcgacacccat 91  Q
    |||||||||| ||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||        ||||||||||||||||||||| ||||    
T  5433535 acaatcctaagcattaaaatgagtcaagtttagtttactaagagaagaagatatagatagatagatagatagatagatgctccaaagatgcgacatccat 5433436  T
Q  92 attgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
     |||||| ||| ||||| ||| ||||||||||||||||  |||||| ||| | ||||||    
T  5433435 cttgttcatcacctcctcaaacttgtcatgcttcacaatttttgttagaaagcctgctt 5433377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 25417584 - 25417661
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  25417584 agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 25417661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 39065175 - 39065252
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       |||||||||||| |||||||||||| |||||||||||||||||| || |||||    
T  39065175 agtctccttttatttacttgatctc-------gtgattccttgtttcaatgtgtttacggtaaaatgtcacaatatttttttaga 39065252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 5766455 - 5766507
Alignment:
Q  192 gtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||||||||||||||| |||||||| |||||||||||||||||| || |||||    
T  5766455 gtgattccttgtctcattgtgtttacggtaaaatgtcacaatatttttttaga 5766507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 244
Target Start/End: Original strand, 47231948 - 47232030
Alignment:
Q  155 gtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||| ||||||| |||||||||||||||||       ||||||| |||||| |||||||||| |||||||||||||||||| || |||||    
T  47231948 gttttagtctccttttatttacttgatctc-------gtgattcattgtctaaatgtgtttacggtaaaatgtcacaatatttttttaga 47232030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 34735480 - 34735749
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatag----atagatagatagatgctccaaagatgcgacacccatattgt 96  Q
    ||||||||| ||| ||||| |||||| |||| ||||||||||||| |||||||||    ||||||||| ||||||||||||||||||||| |||| ||||    
T  34735480 acaatcctagcat-agagttagtcaaatttaatttacaaagagaagaagatatagatagatagatagacagatgctccaaagatgcgacatccatcttgt 34735578  T
Q  97 tcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgct-------tagcagt----------------ttcagtctccctttatt 173  Q
    |||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||       |||||||                |||||||||||||||||    
T  34735579 tcctcagctcctcaaacttgtcatgcttcacaaattttgttgaaatgtctgcttcatatatagcagtagggcaatgtagcggtttcagtctccctttatt 34735678  T
Q  174 tacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  34735679 tacttgatctctaatacagtgattccttgtctcaatgtgtttatgataaaatgtcacaatatttttttaga 34735749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 46094683 - 46094538
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    ||||||||| ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  46094683 acaatcctagcattagagatagtcaagtttagtttacaaagagaagaagatatagatagatagat----gctccaaagatgcgacacccatcttgttcct 46094588  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||||||| ||| ||||||||||||||||| |||| ||||| ||||||||    
T  46094587 cagctccttaaacttgtcatgcttcacaaattttgctggaacgtctgctt 46094538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 20038920 - 20038789
Alignment:
Q  2 caatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcctc 101  Q
    |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| ||||||    |||||||||||||||||| ||| |||||||||    
T  20038920 caatcctagcattagagtgagccaagtttagtttacaaagagaagaagatatagataaatagat----gctccaaagatgcgacactcatcttgttcctc 20038825  T
Q  102 agctcctaaaatttgtcatgcttcacaaactttgtt 137  Q
    | ||||| ||| ||||||||||||||||| ||||||    
T  20038824 aactcctcaaacttgtcatgcttcacaaattttgtt 20038789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 53828709 - 53828807
Alignment:
Q  52 atagatagatagatagatgctccaaagatgcgacacccatattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| || |||||||||||||| |||||||||||||||||||    
T  53828709 atagatagatagatagatgcgccaaagatgcgacacccatcttgttcctcagctccttaaacttttcatgcttcacaaattttgttggaatgtctgctt 53828807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 21630907 - 21631001
Alignment:
Q  150 tagcagtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| || |||||    
T  21630907 tagcggtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtctacgctaaaatgtcacaatatttttttaga 21631001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 21804891 - 21804797
Alignment:
Q  150 tagcagtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || | |||||||||||||||| || |||||    
T  21804891 tagcggtttcagtctccctttatttacttgatctctaatacagtgattctttgtctctatgtgtctacgctaaaatgtcacaatatttttttaga 21804797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 2502817 - 2502978
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatag------------atagatagatagatgctccaaagatgcgacacc 88  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||||||||||            |||||||| |||||||||||||||||||||||     
T  2502817 acaatcctagcattcgagatagtcaagtttagtttacaaagagaataagatatagatagatagatagatagataggtagatgctccaaagatgcgacact 2502916  T
Q  89 catattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||| |||||||| | ||||| ||| ||||||||||||||||| |||| || || ||||||||    
T  2502917 catcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgctt 2502978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 21630718 - 21630883
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagata----------------gatagatagatgctccaaagatgcga 84  Q
    ||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||||                ||||||||||||| ||||||||||||    
T  21630718 acaatccttgcattagagtgagtcaagtttagtttacatagagaagaagatatagatatatagatagataggtagatagatagatgccccaaagatgcga 21630817  T
Q  85 cacccatattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||| || |||||||| | ||||| ||| ||||||||||||||||| |||||||||| ||| ||||    
T  21630818 cacctatcttgttccttaactcctcaaacttgtcatgcttcacaaattttgttggaaagtcagctt 21630883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 2503011 - 2503088
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  2503011 agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 2503088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 53828640 - 53828694
Alignment:
Q  15 agagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagat 69  Q
    ||||| ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  53828640 agagttagtcaagtttagtttacaaagagaagaaaatatagatagatagatagat 53828694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 53828833 - 53828908
Alignment:
Q  153 cagtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatat 235  Q
    |||||| ||||| | |||||||||||||||||       ||||||||||||||||||||||||| ||||||||||||||||||    
T  53828833 cagttttagtcttcttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatat 53828908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 46094480 - 46094428
Alignment:
Q  192 gtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||||||||||||||| |||||||| |||||||||||||||||| || |||||    
T  46094480 gtgattccttgtctcactgtgtttacggtaaaatgtcacaatatttttttaga 46094428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 20037948 - 20037895
Alignment:
Q  163 ctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgttta 216  Q
    |||| ||| |||||| ||||||||||||| |||||| ||||||||||| |||||    
T  20037948 ctccttttgtttactagatctctaatacaatgattctttgtctcaatgcgttta 20037895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 35872544 - 35872399
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagatgctccaaagatgcgacacccatattgttcct 100  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||| ||||||||    
T  35872544 acaatcctagcattagagttagtcaagtttagtttacaaagagaagaagatatagatagatagat----gctccaaagatgcgacacccatcttgttcct 35872449  T
Q  101 cagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  35872448 cagctccttaaacttgtcatgcttcacaaattttgttggaacgtctgctt 35872399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 48268397 - 48268299
Alignment:
Q  52 atagatagatagatagatgctccaaagatgcgacacccatattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||    
T  48268397 atagataaatagatagatgctccaaagatgcgacactcatcttgttcctcagctccttaaacttgtcatgcttcacaaattttgttggaacgtctgctt 48268299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 52352053 - 52351892
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagat------------gctccaaagatgcgacacc 88  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||     
T  52352053 acaatcctagcattcgagatagtcaagtttagtttacaaagagaataagatatagatagatagatagatagataggtagatgctccaaagatgcgacact 52351954  T
Q  89 catattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||| |||||||| | ||||| ||| ||||||||||||||||| |||| || || ||||||||    
T  52351953 catcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgctt 52351892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 48268273 - 48268189
Alignment:
Q  153 cagtttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||||| ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  48268273 cagttttagtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 48268189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 52351859 - 52351782
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  52351859 agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 52351782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 35872340 - 35872298
Alignment:
Q  193 tgattccttgtctcaatgtgtttatggtaaaatgtcacaatat 235  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  35872340 tgattccttgtctcaatgtgtttacggtaaaatgtcacaatat 35872298  T

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Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 18884760 - 18884609
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatata--gatagatagatagatgctccaaagatgcgacacccatattgttc 98  Q
    ||||||||| |||  ||||||||||||||||||||| |||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||| |||||     
T  18884760 acaatcctagcatcggagtgagtcaagtttagtttataaagagaagaagatatatagatagatagatagatgctccaaagatgtgacacccatcttgttt 18884661  T
Q  99 ctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||| ||||| ||| ||||||||||||||||  ||||| |||| ||||||||    
T  18884660 ctcaactcctcaaacttgtcatgcttcacaatttttgtaggaacgtctgctt 18884609  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 13431268 - 13431429
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatag------------atagatagatagatgctccaaagatgcgacacc 88  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||||||||||            |||||||| |||||||||||||||||||||||     
T  13431268 acaatcctagcattcgagatagtcaagtttagtttacaaagagaataagatatagatagatagatagatagataggtagatgctccaaagatgcgacact 13431367  T
Q  89 catattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||| |||||||| | ||||| ||| ||||||||||||||||| |||| || || ||||||||    
T  13431368 catcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgctt 13431429  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 18884571 - 18884510
Alignment:
Q  165 ccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatg 226  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  18884571 ccctttctttacttgatctctaatacattgattccttgtctcaatgtgtttacggtaaaatg 18884510  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 13431462 - 13431539
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  13431462 agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 13431539  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39625650 - 39625499
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatata--gatagatagatagatgctccaaagatgcgacacccatattgttc 98  Q
    ||||||||| |||  ||||||||||||||||||||| |||||||| ||||||||  ||||||||||||||||||||||||||| ||||||||| |||||     
T  39625650 acaatcctagcatcggagtgagtcaagtttagtttataaagagaagaagatatatagatagatagatagatgctccaaagatgtgacacccatcttgttt 39625551  T
Q  99 ctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    |||| ||||| ||| ||||||||||||||||  ||||| |||| ||||||||    
T  39625550 ctcaactcctcaaacttgtcatgcttcacaatttttgtaggaacgtctgctt 39625499  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 235
Target Start/End: Original strand, 22910671 - 22910877
Alignment:
Q  52 atagatagatagatagatgctccaaagatgcgacacccatattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgct-- 149  Q
    ||||||||||||||| |||||||||||||||| ||| ||| |||||||||| ||||| ||| ||||||||||||||||| |||||||||| |||||||      
T  22910671 atagatagatagatacatgctccaaagatgcggcactcatcttgttcctcaactcctcaaacttgtcatgcttcacaaattttgttggaacgtctgcttc 22910770  T
Q  150 -----tagcagt----------------ttcagtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtc 228  Q
         |||||||                ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  22910771 atatatagcagtaggataatgtagcggtttcagtctccctttatttacttgatctctaatacagtgactccttatctcaatgtgtttacggtaaaatgtc 22910870  T
Q  229 acaatat 235  Q
    |||||||    
T  22910871 acaatat 22910877  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 13788556 - 13788395
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagat------------gctccaaagatgcgacacc 88  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||     
T  13788556 acaatcctagcattcgagatagtcaagtttagtttacaaagagaataagatatagatagatagatagatagataggtagatgctccaaagatgcgacact 13788457  T
Q  89 catattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||| |||||||| | ||||| ||| ||||||||||||||||| |||| || || ||||||||    
T  13788456 catcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgctt 13788395  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 25805586 - 25805747
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatag------------atagatagatagatgctccaaagatgcgacacc 88  Q
    ||||||||| |||| |||  |||||||||||||||||||||||||||||||||||            |||||||| |||||||||||||||||||||||     
T  25805586 acaatcctagcattcgagatagtcaagtttagtttacaaagagaataagatatagatagatagatagatagataggtagatgctccaaagatgcgacact 25805685  T
Q  89 catattgttcctcagctcctaaaatttgtcatgcttcacaaactttgttggaatgtctgctt 150  Q
    ||| |||||||| | ||||| ||| ||||||||||||||||| |||| || || ||||||||    
T  25805686 catcttgttccttatctccttaaacttgtcatgcttcacaaattttgctgaaacgtctgctt 25805747  T

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Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 39625461 - 39625382
Alignment:
Q  165 ccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  39625461 ccctttctttacttgatctctaatacattgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 39625382  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 22910601 - 22910668
Alignment:
Q  1 acaatcctaacattagagtgagtcaagtttagtttacaaagagaataagatatagatagatagatagat 69  Q
    ||||||||| |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||    
T  22910601 acaatcctagcattagagtgagtcaaatttagtttacaaa-agaagaagatatagatagatagatagat 22910668  T

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Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 13788362 - 13788285
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  13788362 agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 13788285  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 25805780 - 25805857
Alignment:
Q  160 agtctccctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatatattcttaga 244  Q
    ||||||| |||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||| || |||||    
T  25805780 agtctccttttatttacttgatctc-------gtgattccttgtctcaatgtgtttacggtaaaatgtcacaatatttttttaga 25805857  T

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Target: scaffold0084 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 13762 - 13643
Alignment:
Q  11 cattagagtgagtcaagtttagtttacaaagagaataagatatagatagata----gatagatgctccaaagatgcgacacccatattgttcctcagctc 106  Q
    |||||||||| |||||||||||||||||||||||| |||||||| |||||||    |||||||| |||||||||| ||||||||| |||||||||| |||    
T  13762 cattagagtgcgtcaagtttagtttacaaagagaagaagatataaatagatatatagatagatgttccaaagatgtgacacccatcttgttcctcacctc 13663  T
Q  107 ctaaaatttgtcatgcttca 126  Q
    || ||| |||||||||||||    
T  13662 ctcaaacttgtcatgcttca 13643  T

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Target: scaffold0084; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 13580 - 13512
Alignment:
Q  166 cctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatat 235  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  13580 cctttgtttacttgatatctaatacaatgattccttgtctcaatgtgtttatagtaaaat-tcacaatat 13512  T

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Target: scaffold0516 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 4349 - 4280
Alignment:
Q  166 cctttatttacttgatctctaatacagtgattccttgtctcaatgtgtttatggtaaaatgtcacaatat 235  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||||||||||  ||||||| |||||||||    
T  4349 cctttgtttacttgatatctaatacaatgattccttgtctcaatgtgtttacagtaaaatttcacaatat 4280  T

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Target: scaffold0516; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 4522 - 4411
Alignment:
Q  23 tcaagtttagtttacaaagagaataagatatagatagatagatagat--------gctccaaagatgcgacacccatattgttcctcagctcctaaaatt 114  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||        | |||||||||| ||||||||| ||||| |||| ||||| ||| |    
T  4522 tcaagtttagtttacaaagagaagaagatataaatagatatatagatagatatatgttccaaagatgtgacacccatcttgtttctcacctcctcaaact 4423  T
Q  115 tgtcatgcttca 126  Q
    ||||||||||||    
T  4422 tgtcatgcttca 4411  T

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