View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2372_low_5 (Length: 237)
Name: NF2372_low_5
Description: NF2372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2372_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 10443024 - 10442803
Alignment:
| Q |
4 |
gtctttacaaactaaaaataccacgcatattaaaatttgctttaaatctcacttacttttgacgattagttaatcgactccttttctatcttcgattgtc |
103 |
Q |
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| T |
10443024 |
gtctttaaaaattaaaaataccacacatattaaaatttgctttaaatctcacttacttttgacgattaattaatcggcttcttttctatcttcgattgtc |
10442925 |
T |
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| Q |
104 |
atctctaaaaatgaaaacatttgatatgaaaagct----nnnnnnnnngattttacagtgaacaaatctgtaagatgcgaataatttttaccataaaaat |
199 |
Q |
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| T |
10442924 |
atctctaaaaatgaaaacatttgatatgaaaaactaaaaaaaaaaaaagattttacagtgaacaaatttgtaagatgcgaataatttttaccatcaaaat |
10442825 |
T |
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| Q |
200 |
tgctattaggttacataaattt |
221 |
Q |
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||||||||||| |||||||||| |
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| T |
10442824 |
tgctattaggtcacataaattt |
10442803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 2586475 - 2586443
Alignment:
| Q |
31 |
tattaaaatttgctttaaatctcacttactttt |
63 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
2586475 |
tattaaaatttgctttaaacctcacttactttt |
2586443 |
T |
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