View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2373_high_4 (Length: 333)
Name: NF2373_high_4
Description: NF2373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2373_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 44838730 - 44839049
Alignment:
| Q |
1 |
ttcagtgattttaatgcaagtagaagacaatgtgttatctagaaaaatatgaaggagagtacaagtacttact---caaggtggaaaacttataataaaa |
97 |
Q |
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| T |
44838730 |
ttcagtgattttaatgcaagtagaagacaatgtgttatctagaaaaatatgaaggagagtacaagtacttactgatcaaggtggaaaacttataataaaa |
44838829 |
T |
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| Q |
98 |
tgaaatttataaggaatacgtaatgctgatggatggtgattttgtcattgnnnnnnncattgcagtcgttagccagcaattataaaaggcctaatatttt |
197 |
Q |
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| T |
44838830 |
tgaaatttataaggaatacgtaatgctgatggatggtgattttgtcattgtttttttcattgcagtcgttagccagcaattataaaaggcctaatatttt |
44838929 |
T |
|
| Q |
198 |
aattatgtaaacacgctagcagaccagattaatattttaattatttttaaatttatcgttatggaaagaatgattaaaatccaaacaagccatgaagtga |
297 |
Q |
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| T |
44838930 |
aattatgtaaacacgctagcagaccagattaatattttaattatttttaaatttgtcgttatggaaagaatgattaaaatccaaacaagccatgaagtga |
44839029 |
T |
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| Q |
298 |
caccttgagtattatttgtg |
317 |
Q |
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| T |
44839030 |
caccttgagtattatttgtg |
44839049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 299
Target Start/End: Complemental strand, 5166660 - 5166614
Alignment:
| Q |
253 |
tcgttatggaaagaatgattaaaatccaaacaagccatgaagtgaca |
299 |
Q |
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| T |
5166660 |
tcgttatggaaagaatgatttaaatcaaaacaagccatgaagtgaca |
5166614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Original strand, 5268720 - 5268790
Alignment:
| Q |
230 |
tattttaattatttttaaat-ttatcgttatggaaagaatgattaaaatccaaacaagccatgaagtgaca |
299 |
Q |
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| T |
5268720 |
tattttaattatgtataaatattgtcgtgatggaaacaataattaaaatccaaacaagccatgaactgaca |
5268790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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