View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2373_low_1 (Length: 510)

Name: NF2373_low_1
Description: NF2373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2373_low_1
NF2373_low_1
[»] chr2 (8 HSPs)
chr2 (207-506)||(5569966-5570265)
chr2 (306-364)||(5578626-5578684)
chr2 (312-364)||(12066711-12066763)
chr2 (35-84)||(12064833-12064882)
chr2 (312-364)||(12075678-12075728)
chr2 (466-506)||(5579537-5579576)
chr2 (312-364)||(12046993-12047045)
chr2 (312-364)||(12058623-12058675)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 207 - 506
Target Start/End: Original strand, 5569966 - 5570265
Alignment:
Q  207 atggaaaatagaaaagtaaaagtctaggttgagttagatcacgacaatgtcattgcaacagaagtagccaattgacacctttataaaattgaacttgcta 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  5569966 atggaaaatagaaaagtaaaagtctaggttgagttagatcacaacaatgtctttgtaacagaagtagccaatagacacctttattaaattgaacttgcta 5570065  T
Q  307 tgttattatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggactnnnnnnnngtccatgtttaatttttactctcttctttcacac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||    
T  5570066 tgttattatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggactaaaaaaaagttcatgtttaatttttactctcttctttcacac 5570165  T
Q  407 ctcacttggcatttggaaaacaattgcaacacacatgaaatgaaactcagtcctccctatgcaacaaattctcatcactatttttcagctcattcatctc 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5570166 ctcacttggcatttggaaaacaattgcaacacacatgaaatgaaactcagtcctgcctatgcaacaaattctcatcactatttttcagctcattcatctc 5570265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 5578626 - 5578684
Alignment:
Q  306 atgttattatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact 364  Q
    |||||||||||||| ||||||   ||||||||||||||||||||  |||||||||||||    
T  5578626 atgttattatataggacaactctacgtatgttatgtttctttgcaagcaatgtgggact 5578684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 12066763 - 12066711
Alignment:
Q  312 ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact 364  Q
    ||||||||||||||||| | | ||||||||||||||| | |||||||||||||    
T  12066763 ttatatagaacaacttcacatgtgttatgtttctttggtagcaatgtgggact 12066711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 12064882 - 12064833
Alignment:
Q  35 ctttgagtatgtcataaccattagagtttacaaatgttggaatgaatttc 84  Q
    |||||||||||||  ||||||||| |||| |||||| |||||||||||||    
T  12064882 ctttgagtatgtctgaaccattagtgtttgcaaatgatggaatgaatttc 12064833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 12075728 - 12075678
Alignment:
Q  312 ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact 364  Q
    ||||||||||||||||| |||||  |||||||||||||| ||||| |||||||    
T  12075728 ttatatagaacaacttcacgtat--tatgtttctttgctagcaatatgggact 12075678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 506
Target Start/End: Original strand, 5579537 - 5579576
Alignment:
Q  466 tgcaacaaattctcatcactatttttcagctcattcatctc 506  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  5579537 tgcaacaatttctcatcact-tttttcagctcattcatctc 5579576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 12047045 - 12046993
Alignment:
Q  312 ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact 364  Q
    ||||||| ||||||||| | | |||||| |||||||||| |||||||||||||    
T  12047045 ttatatataacaacttcacatgtgttatttttctttgctagcaatgtgggact 12046993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 12058675 - 12058623
Alignment:
Q  312 ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggact 364  Q
    ||||||| ||||||||| | | ||||||||||||||||| ||||| |||||||    
T  12058675 ttatatataacaacttcacatgtgttatgtttctttgctagcaatatgggact 12058623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University