View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2373_low_10 (Length: 255)
Name: NF2373_low_10
Description: NF2373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2373_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 28410525 - 28410607
Alignment:
| Q |
158 |
ccaaactcatcacaaattactcattaaacaaatggtttatgcatttgtatatttgttaaaaacaatgattctcttagttgttg |
240 |
Q |
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| T |
28410525 |
ccaaactcatcacaaattactcattaaacaaatggtttatgcatttgtatatttgttaaaaacaatgattctcttagttgttg |
28410607 |
T |
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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 28410370 - 28410454
Alignment:
| Q |
11 |
ttattcttctgaatgcttcttgctacgagaaagagagaaaattaatcatcacagttcatagagcttacaagttacaaaggttatca |
96 |
Q |
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| T |
28410370 |
ttattcttctgaatgcttcttgctacgagaaagagagaaaattaatgatcacagttcatagagcttacaagttac-aaggttatca |
28410454 |
T |
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