View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2373_low_16 (Length: 242)

Name: NF2373_low_16
Description: NF2373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2373_low_16
NF2373_low_16
[»] chr8 (15 HSPs)
chr8 (62-239)||(1296821-1296998)
chr8 (1-61)||(1297289-1297349)
chr8 (143-219)||(23550767-23550843)
chr8 (155-232)||(14762469-14762547)
chr8 (143-228)||(16872439-16872525)
chr8 (143-220)||(18185492-18185569)
chr8 (145-228)||(16864053-16864137)
chr8 (143-228)||(39284312-39284398)
chr8 (62-131)||(8080498-8080567)
chr8 (62-131)||(10844804-10844873)
chr8 (62-131)||(22026300-22026369)
chr8 (62-131)||(22549151-22549220)
chr8 (146-218)||(9634924-9634996)
chr8 (75-131)||(32292318-32292374)
chr8 (156-227)||(35455531-35455603)
[»] chr3 (5 HSPs)
chr3 (143-230)||(32078135-32078223)
chr3 (145-220)||(34344472-34344547)
chr3 (192-228)||(390607-390644)
chr3 (143-219)||(43649629-43649705)
chr3 (143-219)||(47915911-47915987)
[»] chr1 (21 HSPs)
chr1 (143-230)||(11030154-11030242)
chr1 (143-228)||(13352567-13352653)
chr1 (169-230)||(27352400-27352462)
chr1 (143-228)||(27952722-27952808)
chr1 (62-125)||(20057875-20057938)
chr1 (160-230)||(27327270-27327341)
chr1 (146-232)||(34186335-34186422)
chr1 (143-228)||(6049812-6049898)
chr1 (143-228)||(26061741-26061827)
chr1 (62-131)||(20054236-20054305)
chr1 (62-131)||(20054692-20054761)
chr1 (62-131)||(20055148-20055217)
chr1 (62-131)||(20055604-20055673)
chr1 (62-131)||(20056060-20056129)
chr1 (62-131)||(20056516-20056585)
chr1 (62-131)||(20056963-20057032)
chr1 (62-131)||(20057419-20057488)
chr1 (143-230)||(5466972-5467060)
chr1 (143-219)||(26448115-26448191)
chr1 (156-239)||(35150083-35150167)
chr1 (144-220)||(35370407-35370483)
[»] chr7 (6 HSPs)
chr7 (143-228)||(39983341-39983427)
chr7 (62-104)||(33316675-33316717)
chr7 (75-131)||(6747767-6747823)
chr7 (143-228)||(28587050-28587136)
chr7 (62-131)||(2463563-2463632)
chr7 (195-239)||(3346667-3346712)
[»] chr4 (11 HSPs)
chr4 (143-228)||(26855435-26855521)
chr4 (143-230)||(19721229-19721317)
chr4 (140-228)||(35340711-35340800)
chr4 (147-219)||(41855123-41855195)
chr4 (143-228)||(3086134-3086220)
chr4 (62-131)||(1645899-1645968)
chr4 (62-131)||(12692149-12692218)
chr4 (89-142)||(39180726-39180779)
chr4 (156-228)||(42133637-42133710)
chr4 (143-179)||(38052420-38052456)
chr4 (75-131)||(50398701-50398757)
[»] chr5 (6 HSPs)
chr5 (143-228)||(28024678-28024763)
chr5 (143-228)||(2123751-2123837)
chr5 (143-228)||(2881936-2882022)
chr5 (192-232)||(16745453-16745494)
chr5 (62-131)||(34371533-34371602)
chr5 (62-131)||(34371989-34372058)
[»] chr2 (4 HSPs)
chr2 (145-228)||(6714004-6714088)
chr2 (143-228)||(39235062-39235148)
chr2 (192-228)||(5274520-5274557)
chr2 (62-131)||(33770931-33771000)
[»] chr6 (3 HSPs)
chr6 (143-232)||(7595974-7596064)
chr6 (143-228)||(21072048-21072134)
chr6 (75-131)||(11062207-11062263)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 1296998 - 1296821
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcctcagacgttacaatttattattctatcttct 161  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1296998 tagaagctgttatgagccgcgcattgtcatgtcttgtgcaccggtcatcactccctgccctcgtaagcctcagacgttacaatttattattctatcttct 1296899  T
Q  162 ttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaatcataatatttctatttcat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1296898 ttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaatcataatatttctatttcat 1296821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1297349 - 1297289
Alignment:
Q  1 aaatttagacccttaagtctggttccgaagccatcttctcgcaatttgctcatagttgtcg 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1297349 aaatttagacccttaagtctggttccgaagccatcttctcgcaatttgctcatagttgtcg 1297289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 23550767 - 23550843
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa 219  Q
    |||||||||| | |||||||| ||||||||||||||| || | ||| | || |||||||||||||||| ||||||||    
T  23550767 atttattattttctcttctttcaattctttaatttatctttcttatactatctattaaagacaattttgtaaaacaa 23550843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 14762469 - 14762547
Alignment:
Q  155 atcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatatttct 232  Q
    ||||| ||| ||||||||||||||| || |  || | ||||||||| |||||||||||||||||| |||||||||||||    
T  14762469 atcttatttcaattctttaatttatctttctcataccatttattaaggacaattttataaaacaactcataatatttct 14762547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 16872525 - 16872439
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| ||| |||||||| |||||||| |||||| || || ||   ||||||||| |||||||||||||||||| |||||||||    
T  16872525 atttattactctttcttctttcaattctttcatttatctttcacatatcatttattaaggacaattttataaaacaactcataatat 16872439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 18185492 - 18185569
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaat 220  Q
    |||||||| | |||||||||| | ||||||||||||| || |  || | ||||||||||||||||||| |||||||||    
T  18185492 atttattactttatcttcttttagttctttaatttatttttctcataccatttattaaagacaattttgtaaaacaat 18185569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 16864053 - 16864137
Alignment:
Q  145 ttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||| ||||||| |||| ||||||||||||||| || ||||| | ||| |||||  |||||||| |||||||| |||||||||    
T  16864053 ttattactctatctactttcaattctttaatttatctttcatataccattaattaagaacaattttgtaaaacaactcataatat 16864137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 39284312 - 39284398
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| ||| |||||||| ||||| || |||||| || | |||  |||||||| ||||||||||| |||||||| |||||||||    
T  39284312 atttattactctctcttctttcaattccttcatttatctttcctatataatttattgaagacaattttgtaaaacaactcataatat 39284398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 8080498 - 8080567
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||||| ||||||| | ||||| |||||||||||||||  | ||||||  |||||||| |||||    
T  8080498 tagaagctgttaagagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagcct 8080567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 10844873 - 10844804
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  10844873 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 10844804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 22026369 - 22026300
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | |||||||||||||||||||||  | ||||||  |||||||| |||||    
T  22026369 tagaagctgtcaggagccgctcattgtcatgccttgtgcaccggcgaccactcctcgccctcgtcagcct 22026300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 22549151 - 22549220
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  22549151 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 22549220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 9634924 - 9634996
Alignment:
Q  146 tattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaaca 218  Q
    ||||| ||| |||||||| ||||||||||||||| || |  || | ||||||||| ||||||||| |||||||    
T  9634924 tattagtctctcttctttcaattctttaatttatttttctcataccatttattaaggacaattttgtaaaaca 9634996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 32292374 - 32292318
Alignment:
Q  75 gagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    ||||||| | ||||| |||||||||||||||  ||||||||| |||||||| |||||    
T  32292374 gagccgctcattgtcgtgccttgtgcaccggcgatcactccccgccctcgtcagcct 32292318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 35455531 - 35455603
Alignment:
Q  156 tcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataata 227  Q
    |||||||| ||||||||||||||| || ||||| | ||||||||| || |||||| |||| ||| ||||||||    
T  35455531 tcttcttttaattctttaatttatctttcatataccatttattaaggataattttgtaaaccaactcataata 35455603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 32078135 - 32078223
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatattt 230  Q
    |||||||| |||||||| ||| ||||||||||||||| || |  || |||||||||||||| |||||| |||||||| |||||||||||    
T  32078135 atttattactctatcttatttcaattctttaatttatctttctcatacaatttattaaagataattttgtaaaacaactcataatattt 32078223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 34344472 - 34344547
Alignment:
Q  145 ttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaat 220  Q
    |||||||| |||||| ||| ||||||||||||||| || |  || | |||||||||||||||||||||||||||||    
T  34344472 ttattattatatcttttttcaattctttaatttatctttctcatactatttattaaagacaattttataaaacaat 34344547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 390644 - 390607
Alignment:
Q  192 atttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||||||||||||||||||||||| |||||||||    
T  390644 atttattaaagacaattttataaaacaactcataatat 390607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 43649629 - 43649705
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa 219  Q
    |||||||||  |||||||||| |||| ||||| ||||||| || ||   |||||||||||| |||||| ||||||||    
T  43649629 atttattatgatatcttctttcaattttttaacttatatttcacatatcatttattaaagaaaattttgtaaaacaa 43649705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 47915987 - 47915911
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa 219  Q
    |||||||| ||| | |||||| |||| |||||||||| || |  || ||||||||||| || |||||||||||||||    
T  47915987 atttattactctcttttctttcaattatttaatttatctttctcatacaatttattaaggataattttataaaacaa 47915911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 11030154 - 11030242
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatattt 230  Q
    |||||||||||| |||||||| |||| |||||||||| || || || | |||||||| |||||||||||||| |||| |||||||||||    
T  11030154 atttattattctctcttctttcaattttttaatttatctttcacataccatttattagagacaattttataatacaactcataatattt 11030242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 13352567 - 13352653
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| |||||||||||| ||||||||||||||| || |  || ||| |||||||||| |||||| |||||||| |||||||||    
T  13352567 atttattactctatcttctttcaattctttaatttatctttctcatacaacttattaaagataattttgtaaaacaactcataatat 13352653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 27352400 - 27352462
Alignment:
Q  169 ctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatattt 230  Q
    |||||||||||||| |  ||  ||||||||||||||||||||||||||||| |||||||||||    
T  27352400 ctttaatttatatttctcatataatttattaaagacaattttataaaacaactcataatattt 27352462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 27952722 - 27952808
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| ||| |||||||| ||||||||||||||| || |  || | ||||||||| ||||||||| |||||||| |||||||||    
T  27952722 atttattactctctcttctttcaattctttaatttatctttctcataccatttattaaggacaattttgtaaaacaactcataatat 27952808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 20057875 - 20057938
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgt 125  Q
    |||||||||||| ||||||| | ||||| |||||||||||||||  | ||||||| ||||||||    
T  20057875 tagaagctgttaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgt 20057938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 27327270 - 27327341
Alignment:
Q  160 ctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatattt 230  Q
    |||| ||| |||||||||||||| |  || |||||||||||||| |||||||||||| || |||||||||||    
T  27327270 ctttcaatactttaatttatatttctcatacaatttattaaagataattttataaaataattcataatattt 27327341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 34186422 - 34186335
Alignment:
Q  146 tattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatatttct 232  Q
    ||||| |||||||| ||| |||| ||||||||||||| |  || | |||||||||||| |||||| |||||||| | |||||||||||    
T  34186422 tattactctatctttttttaattttttaatttatatttctcatactatttattaaagataattttgtaaaacaacttataatatttct 34186335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 6049812 - 6049898
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaac-aatcataatat 228  Q
    |||||||| ||| |||||||| |||| |||||||||| || |||||   || ||||||  ||||||||||||||| |||||||||||    
T  6049812 atttattactctctcttcttttaattatttaatttatctttcatatatcatctattaagaacaattttataaaacaaatcataatat 6049898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 26061827 - 26061741
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatatt--ccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| | |||||| ||| |||||||| |||||||||  ||||||   ||||||||||||||||||| |||||||| |||||||||    
T  26061827 atttattactatatcttttttcaattctttcatttatattttccatatt--atttattaaagacaattttgtaaaacaactcataatat 26061741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 20054236 - 20054305
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  20054236 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 20054305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 20054692 - 20054761
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  20054692 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 20054761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 20055148 - 20055217
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  20055148 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 20055217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 20055604 - 20055673
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  20055604 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 20055673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 20056060 - 20056129
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  20056060 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 20056129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 20056516 - 20056585
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  20056516 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 20056585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 20056963 - 20057032
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  20056963 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 20057032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 20057419 - 20057488
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  20057419 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 20057488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 5467060 - 5466972
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatattt 230  Q
    |||||||| ||| | |||||| |||||||||||||||  | |  || ||| ||||||| ||||||||| |||||||| |||||||||||    
T  5467060 atttattactctctattctttcaattctttaatttatcattctcatacaacttattaaggacaattttgtaaaacaactcataatattt 5466972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 26448191 - 26448115
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa 219  Q
    |||||||| || ||||||||| ||||||||||||||| || || ||   ||||||||| ||||||||| ||| ||||    
T  26448191 atttattactccatcttctttcaattctttaatttatctttcacatttcatttattaaggacaattttgtaacacaa 26448115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 239
Target Start/End: Complemental strand, 35150167 - 35150083
Alignment:
Q  156 tcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatatttctatttcat 239  Q
    |||||||| |||| |||||||||| || |  ||  |||||||||| || ||||||||||||||| ||||||||| ||| ||||||    
T  35150167 tcttctttcaattatttaatttatctttctcatataatttattaaggataattttataaaacaactcataatatctctttttcat 35150083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 35370407 - 35370483
Alignment:
Q  144 tttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaat 220  Q
    ||||| ||||| | |||||| ||||||||||||||||||    || | ||||||||| || ||||||||||||||||    
T  35370407 tttatcattctcttttctttcaattctttaatttatattttcaataccatttattaaggataattttataaaacaat 35370483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 39983427 - 39983341
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| |||||||||||| |||||||| ||||||||| |  ||   ||||||||| |||||||||||||||||| |||||||||    
T  39983427 atttattactctatcttctttcaattctttcatttatatttctcatattatttattaaggacaattttataaaacaactcataatat 39983341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 33316717 - 33316675
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccg 104  Q
    |||||||||| ||||||||| ||||||||||||||||||||||    
T  33316717 tagaagctgtcatgagccgctcgttgtcatgccttgtgcaccg 33316675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 6747767 - 6747823
Alignment:
Q  75 gagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    ||||||| | |||||||||||||||||||||  | |||||||||||||||| |||||    
T  6747767 gagccgctcattgtcatgccttgtgcaccggcgaccactccctgccctcgtcagcct 6747823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 28587050 - 28587136
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||||||| | |||||| |||||||| |||||| || |  |||  ||||||||| ||||||||| |||||||| |||||||||    
T  28587050 atttattattctcttttctttcaattctttcatttatctttctcatgttatttattaaggacaattttgtaaaacaactcataatat 28587136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 2463632 - 2463563
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||||| ||||||  | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  2463632 tagaagctgttaggagccgttcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 2463563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 3346712 - 3346667
Alignment:
Q  195 tattaaagacaattttataaaacaa-tcataatatttctatttcat 239  Q
    |||||| |||||||||||||||||| ||||||||||||| ||||||    
T  3346712 tattaaggacaattttataaaacaattcataatatttctctttcat 3346667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 26855435 - 26855521
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| ||| |||||||| ||||||||||||||| || |  || ||||||||||| ||||||||| |||||||| |||||||||    
T  26855435 atttattactctctcttctttcaattctttaatttatctttcccatacaatttattaaggacaattttgtaaaacaactcataatat 26855521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 19721317 - 19721229
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatattt 230  Q
    |||||||| ||| |||||||| ||||||||||||||| || | ||| | ||||||||| ||||| ||| |||||||| |||||||||||    
T  19721317 atttattactctctcttctttcaattctttaatttatctttcttataccatttattaaggacaaatttgtaaaacaactcataatattt 19721229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 35340711 - 35340800
Alignment:
Q  140 acaatttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||| |||||||| |||||||||| ||||||||||||||| || | ||| | |||||| ||  |||||||| |||||||| |||||||||    
T  35340711 acaaattattattttatcttctttcaattctttaatttatctttcttataccatttatcaagaacaattttgtaaaacaattcataatat 35340800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 41855123 - 41855195
Alignment:
Q  147 attattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa 219  Q
    |||| ||| |||||||| ||||||||||||||| || |  ||  |||||| ||||||||||||||||||||||    
T  41855123 attactctctcttctttcaattctttaatttatttttctcataaaatttactaaagacaattttataaaacaa 41855195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 3086220 - 3086134
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| ||| |||| ||| ||||||||||||||| || |  ||  |||||||||| ||||||||| |||||||| |||||||||    
T  3086220 atttattactctctcttatttcaattctttaatttatctttctcatataatttattaaggacaattttgtaaaacaactcataatat 3086134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 1645899 - 1645968
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  1645899 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 1645968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 12692149 - 12692218
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  12692149 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 12692218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 39180726 - 39180779
Alignment:
Q  89 catgccttgtgcaccggtcatcactccctgccctcgtaagcctcagacgttaca 142  Q
    |||| ||||||||||||| ||||||||| | |||||| |||||||| |||||||    
T  39180726 catgtcttgtgcaccggtgatcactccccgtcctcgtcagcctcaggcgttaca 39180779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 42133710 - 42133637
Alignment:
Q  156 tcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| ||||||||||||||| ||    || ||||||||||| ||||||||| |||||||| |||||||||    
T  42133710 tcttctttcaattctttaatttatcttttccatacaatttattaaggacaattttgtaaaacaactcataatat 42133637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 38052456 - 38052420
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttat 179  Q
    |||||||||| |||||||||| |||||||||||||||    
T  38052456 atttattattttatcttctttcaattctttaatttat 38052420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 50398701 - 50398757
Alignment:
Q  75 gagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    ||||||| | |||||||||||||||||||||  | ||||||| |||||||| |||||    
T  50398701 gagccgctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagcct 50398757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 28024678 - 28024763
Alignment:
Q  143 atttattattctatcttctttaaattctttaattta-tattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| |||||||||||| |||||||| ||||| | ||||||||  |||||||||| ||||||||| |||||||| |||||||||    
T  28024678 atttattactctatcttctttcaattctttcatttatttttccatat--aatttattaaggacaattttgtaaaacaactcataatat 28024763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 2123837 - 2123751
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||||||| |||||||| | ||||||||||||| || |  || | ||||||||| || |||||| |||||||| |||||||||    
T  2123837 atttattattctctcttctttcatttctttaatttatctttctcataccatttattaaggataattttgtaaaacaactcataatat 2123751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Original strand, 2881936 - 2882022
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatatt--ccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| | | |||||||| |||||||| |||||||||  ||||||   ||||||||| |||||||||||||||||| |||||||||    
T  2881936 atttattactatctcttctttcaattctttcatttatattttccatatt--atttattaaggacaattttataaaacaattcataatat 2882022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 16745453 - 16745494
Alignment:
Q  192 atttattaaagacaattttataaaacaa-tcataatatttct 232  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  16745453 atttattaaagacaattttgtaaaacaactcataatatttct 16745494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 34371602 - 34371533
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  34371602 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 34371533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 34372058 - 34371989
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  34372058 tagaagctgtcaggagccgctcattgtcctgccttgtgcaccggcgaccactccccgccctcgtcagcct 34371989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 6714004 - 6714088
Alignment:
Q  145 ttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||| |||||||||||| |||||||| ||||||||| |  ||   ||||||||| ||||||||| |||||||| |||||||||    
T  6714004 ttattactctatcttctttcaattctttcatttatatttcccatattatttattaaggacaattttgtaaaacaactcataatat 6714088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 39235148 - 39235062
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| ||| |||||||| ||||| ||||||||| || | |||   ||||||| ||||||||||| |||||||| |||||||||    
T  39235148 atttattactctttcttctttcaattccttaatttatctttcctatatcatttattgaagacaattttgtaaaacaactcataatat 39235062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 228
Target Start/End: Complemental strand, 5274557 - 5274520
Alignment:
Q  192 atttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||||||||||||||||||||||| |||||||||    
T  5274557 atttattaaagacaattttataaaacaactcataatat 5274520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 33771000 - 33770931
Alignment:
Q  62 tagaagctgttatgagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    |||||||||| | ||||||| | ||||| |||||||||||||||  | ||||||| |||||||| |||||    
T  33771000 tagaagctgtcaggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagcct 33770931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 7595974 - 7596064
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatatttct 232  Q
    |||||||||| |||||||||| ||||||||||||||| || |  |  | ||||||||| || |||| | |||||||| |||||||||||||    
T  7595974 atttattattatatcttctttcaattctttaatttatctttccgacaccatttattaaggaaaattgtgtaaaacaactcataatatttct 7596064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 21072134 - 21072048
Alignment:
Q  143 atttattattctatcttctttaaattctttaatttatattccatatgcaatttattaaagacaattttataaaacaa-tcataatat 228  Q
    |||||||| ||| |||||||| || |||||||||||| || |  || | ||||||||| ||||||||| |||||||| |||||||||    
T  21072134 atttattactctctcttctttcaaatctttaatttatctttctcataccatttattaaggacaattttgtaaaacaactcataatat 21072048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 11062263 - 11062207
Alignment:
Q  75 gagccgcacgttgtcatgccttgtgcaccggtcatcactccctgccctcgtaagcct 131  Q
    ||||||| | ||||| |||||||||||||||| | ||||||| ||| ||||||||||    
T  11062263 gagccgctcattgtcgtgccttgtgcaccggtgaccactccccgccttcgtaagcct 11062207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University