View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2373_low_17 (Length: 239)
Name: NF2373_low_17
Description: NF2373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2373_low_17 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 41573483 - 41573704
Alignment:
| Q |
18 |
acatgtttgtcgttgaaaaaaccactgtggcaaatgctccccaagctcttccaagccacacttttccacttccaacgatgttgcaattcacaaaggaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41573483 |
acatgtttgtcgttgaaaaaaccactgtggcaaatgctccccaagctcttccaagccacacttttccacttccaacgatgttgcaattcacaaaggaaaa |
41573582 |
T |
|
| Q |
118 |
tcctgtttcttccttcaatgattgtcgtccatgagctgtgatagatccatcaatcccatccaaatcttgttttgctatacagtttatggtacaatcctgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41573583 |
tcctgtttcttccttcaatgattgtcgtccatgagctgtgatagatccaccaatcccatccaaatcttgttttgctatacagtttatggtacaatcctgt |
41573682 |
T |
|
| Q |
218 |
ttcacaacttaacaagtgattt |
239 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
41573683 |
ttcacagcttaacaagtgattt |
41573704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 41565563 - 41565711
Alignment:
| Q |
18 |
acatgtttgtcgttgaaaaaaccactgtggcaaatgctccccaagctcttccaagccacacttttccacttccaacgatgttgcaattcacaaaggaaaa |
117 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||| || ||||| |||||||||| ||||||||||| | ||| | ||| |||||||||||||||| |
|
|
| T |
41565563 |
acatgtatgttgttgaaaaaatcactgtggcaaatggtctccaaggtcttccaagcaacacttttccagtaccatcaatgcgacaattcacaaaggaaag |
41565662 |
T |
|
| Q |
118 |
tcctgtttcttccttcaatgattgtcgtccatgagctgtgatagatcca |
166 |
Q |
| |
|
|||||||| | |||||| |||| ||| |||||||||||| ||||| |
|
|
| T |
41565663 |
ccctgtttcattcttcaacgattcacgttgttgagctgtgatatatcca |
41565711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University