View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2373_low_18 (Length: 230)
Name: NF2373_low_18
Description: NF2373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2373_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 7523495 - 7523691
Alignment:
| Q |
16 |
taatacttagagtaaattttaccatgaataatttgggtatttaaaccttaaaatagaggcggttttgtaaatccaccacatcccattcttcctcttgtct |
115 |
Q |
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| T |
7523495 |
taatatttagagtaaattttaccatgaataatttgggtatttaaaccttaaaacagaggcggttttgtaaatccaccacatcccattcttcctcttgtct |
7523594 |
T |
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| Q |
116 |
ctgcatgtgcttttcttactccattcttccaccatcctcctccctaccaccattatcttccaccatcctcatcagtcatcacaaccaacatcgttat |
212 |
Q |
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| T |
7523595 |
ctgcatgtgcttttcttactccattcttccaccatcctcctccctaccaccattatcttccaccattcttatcagtcatcacaaccaacatcgttat |
7523691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 173
Target Start/End: Original strand, 943933 - 944067
Alignment:
| Q |
38 |
catgaataatttgggtatttaaaccttaaaatagaggcggttttgtaaatccaccacatcccattcttcctcttgtctctgcatgtgcttttcttactcc |
137 |
Q |
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| T |
943933 |
catgaataatttgggtatttcaaccttaaagcat-ggtagtattgtaaatacataacaccccattcttcgtctcttctttgcgtgtgcttttctttctcc |
944031 |
T |
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| Q |
138 |
attcttccaccatcctcctccctaccaccattatct |
173 |
Q |
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| T |
944032 |
attcttccaccatcctcctccctataaccattatct |
944067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 961413 - 961556
Alignment:
| Q |
47 |
tttgggtatttaaaccttaaaatagaggcggttttgtaaatccaccacatcccattcttcctcttgtctctgcatgtgcttttcttactccattcttcca |
146 |
Q |
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| T |
961413 |
tttgggtatttcaaccttaaagcaggggcagtattgtaaatacatcacaccccattcttactctcttctttgtgtgtgcttttctttctccatccttcca |
961512 |
T |
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| Q |
147 |
ccatcctcctccctaccaccattatcttccaccatcctcatcag |
190 |
Q |
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|||||||| |||||| ||||||||| ||||| |||||||||| |
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| T |
961513 |
ccatcctcatccctagtgccattatctcccaccgtcctcatcag |
961556 |
T |
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