View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2373_low_4 (Length: 356)
Name: NF2373_low_4
Description: NF2373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2373_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 350
Target Start/End: Complemental strand, 44189987 - 44189657
Alignment:
| Q |
20 |
tcaagcacattcattctcgctttcagtgattctgcttagtgatacctcacaaatgttaaatttcatcacagctgaaatggaaggaaaatacgaagttaag |
119 |
Q |
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| T |
44189987 |
tcaagcacattcattctcgctttcagtgattctgtttagtgatacctcacaaatgttaaatttcatcccagctgaaatggaaggaaaatacgaagttaag |
44189888 |
T |
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| Q |
120 |
agtccattacagaacaccagttccaaaatgaaaaccaaatacacatgcttccctattttaaagtggcagcaaagacaataagactgcacttattcatcct |
219 |
Q |
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| T |
44189887 |
agtccattacagaacaccagttccaaaatgaaaaccaaatacacatgcttccctattctaaagtggcagcaaagacaataagactgcacttattcatcct |
44189788 |
T |
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| Q |
220 |
ctttcttcttaacctcttatagcaaaacaaataagggagaggtttaggcttgtaagcaaatattatacaacagatgatcaacgatttcacaataatgtgc |
319 |
Q |
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| T |
44189787 |
ctttcttcttaacctcttatagcaaaacaaataagggagaggtttaggcttgtaagcaaatattatacaacagatgatcaacgatttcacaataatgtgc |
44189688 |
T |
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| Q |
320 |
gacaaacttatccacacatatttcatctcac |
350 |
Q |
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| T |
44189687 |
gacaaacttatccatacatatttcatatcac |
44189657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 343
Target Start/End: Original strand, 28009404 - 28009555
Alignment:
| Q |
202 |
actgcacttattcatcctctttcttcttaacctcttatagcaaaacaaataagggagaggtttaggcttgtaagcaaatattatacaacagatg------ |
295 |
Q |
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||||||||| ||| |||||||||||||| ||| ||||| ||||||||||| ||| ||||| | ||| |||| ||||||| ||||||||| | |
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| T |
28009404 |
actgcacttcttccccctctttcttcttagccttttataacaaaacaaatataggacaggttcaaacttataagaaaatattttacaacagaagttgata |
28009503 |
T |
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| Q |
296 |
----atcaacgatttcacaataatgtgcgacaaacttatccacacatatttc |
343 |
Q |
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| T |
28009504 |
atcaatcaacaatttcacaataatgtgcaacaaacttatccacgcatatttc |
28009555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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