View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2373_low_7 (Length: 307)

Name: NF2373_low_7
Description: NF2373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2373_low_7
NF2373_low_7
[»] scaffold0010 (1 HSPs)
scaffold0010 (16-295)||(253484-253763)


Alignment Details
Target: scaffold0010 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 253484 - 253763
Alignment:
Q  16 aaacacatgcatgcccaattgtgttataaaccttgtctgacccatatagattaatcctactaactctattctcctttggggttatatactttctaatctc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253484 aaacacatgcatgcccaattgtgttataaaccttgtctgacccatatagattaatcctactaactctattctcctttggggttatatactttctaatctc 253583  T
Q  116 ctcagtgacnnnnnnnttaatcaaaggatcctcttttactgtggagtttcctctttcttcaaactttggaagtctaatctgtcttaaagcaacattagca 215  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253584 ctcagtgacaaaaaaattaatcaaaggatcctcttttactgtggagtttcctctttcttcaaactttggaagtctaatctgtcttaaagcaacattagca 253683  T
Q  216 ctgtgaagaggcctaactatttcatcctctaaatatttcttatctaaggttatgctcttgtttttctccatttcttgttc 295  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  253684 ctatgaagaggcctaactatttcatcctctaaatatttcttatctaaggttatgctcttgtttttctccatttcttgttc 253763  T

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