View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2374_high_1 (Length: 638)
Name: NF2374_high_1
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 347 - 622
Target Start/End: Complemental strand, 40996619 - 40996344
Alignment:
| Q |
347 |
attctcaaagtcaaaactcgccagaaatttcacacttggatgatatagtattgaatatgcatgtaatctcctgggttattcaaaatggtctcagaaccaa |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| |
|
|
| T |
40996619 |
attctcaaagtcaaaactcgccagaaatttcacacttggatgatatagtattgaatatgcatggaatcgcccgggttattcaaaatggtctcagaaccaa |
40996520 |
T |
|
| Q |
447 |
attgtgaaaagattaatcttaaattataattggaaatttacgagaatttgatttggtggacatgagggtatcattagggaaattttatgcagttcactat |
546 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40996519 |
attgtgaaaagattaatcttgaattataattggaaatttacgagaattttatttggtggacatgagggtatcattagggaaattttatgcagttcactat |
40996420 |
T |
|
| Q |
547 |
tattaacaatggaactttttaagacaagtcaaattcttttttgctatgtttgctacagaattcaaaaacatcccac |
622 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40996419 |
tattaacgttggaactttttaagacaagtcaaattcttttttgctatgtttgctacagaattcaaaaacatcccac |
40996344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 40996856 - 40996588
Alignment:
| Q |
19 |
tagtttgccataacagttgaagcatccaaagaagaatagtaattacgtgactatgttatttaagttttaggaggacattaagatttggcatactagaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40996856 |
tagtttgccataacagttgaagcatccaaagaagaatagtaattacgtgactatgttatttaagttttaggaggacattaagatttggcatactagaata |
40996757 |
T |
|
| Q |
119 |
acaatgctagattgagaaagaaaaagttaccaacataaatacattgttattcgaagtaattgaacccccaagtggttaataagttccacccaagaacgaa |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
40996756 |
acaatgctaaattgagaaagaaaaagttaccgacataaatacattgttattcgaagtaattgaacccccaaatggttaataagttccacccaagaacaaa |
40996657 |
T |
|
| Q |
219 |
tagaacttgagttcaaaacgcaagagagcatgatagtattttcaaagtcaaaactcactagaaatttca |
287 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
40996656 |
tagaacttgagttcgaaacgcaagagagcatgatagtattctcaaagtcaaaactcgccagaaatttca |
40996588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University