View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2374_high_10 (Length: 268)
Name: NF2374_high_10
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_high_10 |
 | |
|
| [»] chr7 (13 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22897456 - 22897211
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22897456 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
22897357 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22897356 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
22897257 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22897256 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
22897211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22839239 - 22838994
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||| || |||||||||||| | ||||| || |||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
22839239 |
atcatcaaaggtgttgcttcaggtttggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt |
22839140 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| |
|
|
| T |
22839139 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgatcatggtgctgatcctcacactactcatttggttggaacttttggttatct |
22839040 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22839039 |
tgctcctgatcatattagaacaggtaaggctactaaattttctgat |
22838994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22875115 - 22874870
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| ||||||||||| | ||||||||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
22875115 |
atcatcaaaggtgttgcttcaggtttggtttatctacatgaagaatgggaaaaagttgtgattcatagagacataaaagctagtaatgtgttgttagatt |
22875016 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| | || ||||| |
|
|
| T |
22875015 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacacaactcatttggctggaactattggttatct |
22874916 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| || ||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
22874915 |
tgctccggaacatattagaactggtaaggctactaaattttctgat |
22874870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22804523 - 22804278
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||||| | | || ||||||| ||||||||||||||| | ||||| || |||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
22804523 |
atcatcaaaggtgttgcttcagctgtggtttatcttcacgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt |
22804424 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||| |
|
|
| T |
22804423 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgatcatggtgctgatcctcacactactcatttggttggaacttttggttatct |
22804324 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22804323 |
tgctcctgatcatattagaacaggtaaggctactaaattttctgat |
22804278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22808807 - 22808562
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||| | ||| || ||||||||||||||||||||||| | ||||| |||||| |||||||||||||||| |||||||| |||||| |
|
|
| T |
22808807 |
atcatcaaaggtgttgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtaattcatcgagacataaaggctagtaatgtgttgttagatt |
22808708 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||| |||| ||| || ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||| | || ||||| |
|
|
| T |
22808707 |
ctgaatttaatgctaggttgggagattttggtctttcaaggttgtatgaccatggtgcagatcctcacacaactcatttggttggaactattggttatct |
22808608 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22808607 |
tgcccctgagcatattagaacaggtaaggctactaaattttctgat |
22808562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22888485 - 22888240
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||| || |||||||||||| | ||||| ||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
22888485 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttattcatagagacataaaggctagtaatgtgttgttagatt |
22888386 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|| ||| |||| |||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| | || ||||| |
|
|
| T |
22888385 |
ctggatttaatgctagattgggagattttggtctttcaaggttgcatgatcatggtgctgatcctcacacaactcatttggctggaactattggttatct |
22888286 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| |||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
22888285 |
tgctcctgaacatattagaagaggtaaggctactaaattttctgat |
22888240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22830218 - 22829973
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
|||||||||||| |||| | ||| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
22830218 |
atcatcaaaggtattgcgtcaggtgtggtttatctacacgaagaatgggagaaagttgtgattcatagagacataaaggctagtaatgtgttgttagatt |
22830119 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||| | || ||||| |
|
|
| T |
22830118 |
ctgaatttaattcaagattgggagattttggtctttcaaggttgtatgatcacggtgcagatcctcacacaactcatttggctggaactattggttatct |
22830019 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| |||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
22830018 |
tgctcctgaacatattagaacaggtaaggctacaaaattttctgat |
22829973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22814214 - 22813969
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||| || |||||||||||| | ||||| || |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
22814214 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaagaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttattagatt |
22814115 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |||||| | || ||||| |
|
|
| T |
22814114 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgaccatggtgcagatcctcacacaactcatttggctggaacaattggttatct |
22814015 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| |||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
22814014 |
tgctcctgaacatattagaacaggtaaggccactaaattttctgat |
22813969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 268
Target Start/End: Complemental strand, 22893140 - 22892895
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||||| || || ||||||| || |||||||||||| | ||||| ||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
22893140 |
atcatcaaaggtgttgcttcaggcgtggtttatcttcatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagatt |
22893041 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| ||||||||||||| |||||||| |||| |||||| |||||||||| ||||||| | || ||||| |
|
|
| T |
22893040 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgaccatggtgcagatcatcacacgactcatttggctggaactattggttatct |
22892941 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22892940 |
tgctccggaacatattagaacaggtaaggctactaaattttctgat |
22892895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 22912852 - 22912620
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| |||| ||||||||||| || ||||| |||||||||||||| || ||||| ||||| |||||||||| |
|
|
| T |
22912852 |
atcattaaaggtgttgcttctggtttgttttatttacatgaagaatgggaacaagttgttattcatagagacattaaagctagtaatgttttattagatg |
22912753 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| | |||| || ||||||||||| |||||||||| ||||| ||| | |||||||| | || ||| | |
|
|
| T |
22912752 |
gtgaaatgaatggtagattaggtgattttggtttatcaagattatatgatcatggaactgatcctcaaacaacacatgttgttggaacacttggttattt |
22912653 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctac |
255 |
Q |
| |
|
|||||| |||||||| ||||||||||| ||||| |
|
|
| T |
22912652 |
agcaccagaacatacaagaacaggtaaagctac |
22912620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 22879665 - 22879579
Alignment:
| Q |
182 |
gatcctcacacaactcatttggttggaactgtagggtatctagcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| | || ||||| || | |||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
22879665 |
gatcctcacaaaactcatttggctggaactattggttatcttgctcatgaacatattagaacaggtaaggcgactaaattttctgat |
22879579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 22879779 - 22879668
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||| || ||| |||||||| | ||||| || |||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
22879779 |
atcatcaaaggtgttgcttcaggtgtggtttatcttcatgaaaaatgggagaaagttgttatccatagagacataaaagctagtaatgtgttgttagatt |
22879680 |
T |
|
| Q |
123 |
gtgaattgaatg |
134 |
Q |
| |
|
|||||| |||| |
|
|
| T |
22879679 |
ctgaattcaatg |
22879668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 22934299 - 22934387
Alignment:
| Q |
98 |
aaggctagcaatgtgttattagatggtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcc |
186 |
Q |
| |
|
|||||||| ||||| | |||||| | ||| | ||||| |||||||| |||||||| | |||||||||||||| ||||||||| |||| |
|
|
| T |
22934299 |
aaggctagtaatgttctcttagattgcgaactcaatggaagattaggtgattttggattggcaaggttgtatgaacatggtgctaatcc |
22934387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 21151527 - 21151772
Alignment:
| Q |
23 |
atcatcaaaggtgttgctttgggtttgttttatctacacgaagaatgggagcaggttgtgattcatagagacataaaggctagcaatgtgttattagatg |
122 |
Q |
| |
|
||||||||||||||||||| || || |||||||||| |||||||||||| | ||||| ||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
21151527 |
atcatcaaaggtgttgcttcaagtgtggtttatctacatgaagaatgggagaaagttgtaattcatagagacataaaagctagtaatgtgttgttagatt |
21151626 |
T |
|
| Q |
123 |
gtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcctcacacaactcatttggttggaactgtagggtatct |
222 |
Q |
| |
|
|||||| |||| |||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||| | || ||||| |
|
|
| T |
21151627 |
ctgaatttaatgctagattgggagattttggtctttcaaggttgtatgatcatggtgcagatcctcacacaactcatttggctggaactattggttatct |
21151726 |
T |
|
| Q |
223 |
agcacctgaacatactagaacaggtaaggctactaaattttctgat |
268 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
21151727 |
tgctccggaacatattagaacaggtaaggctactaaatcttctgat |
21151772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 7285475 - 7285387
Alignment:
| Q |
98 |
aaggctagcaatgtgttattagatggtgaattgaatggtagattaggagattttggtcttgcaaggttgtatgatcatggtgctgatcc |
186 |
Q |
| |
|
||||||||||||||| | |||||| |||| | ||||| ||||||| |||||| || |||||||||||||| ||||||||| |||| |
|
|
| T |
7285475 |
aaggctagcaatgtgcttttagattttgaactcaatggaagattagttgattttagttgggcaaggttgtatgaacatggtgctaatcc |
7285387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University