View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_high_1_N (Length: 393)
Name: NF2374_high_1_N
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 95 - 382
Target Start/End: Complemental strand, 3225700 - 3225413
Alignment:
| Q |
95 |
caatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcaggacatgt |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3225700 |
caatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcaggacatgt |
3225601 |
T |
|
| Q |
195 |
taatcctgttaaagctaatgatcccggtcttgtttatgatattcaaccagaagattatgttccttatctatgtggtttgggttattctgataaagagatt |
294 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3225600 |
taatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatctatgtggtttgggttattctgataaagagatt |
3225501 |
T |
|
| Q |
295 |
gaagttattgttcagtggaaagtgaagtgttctaatgtgaaaagtataccagaagcacagctgaactatccttctttctctattctgt |
382 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3225500 |
gaagttattgttcagtggaaagtgaagtgctctaatgtgaaaagtataccagaagcacagctgaactatccttctttctctattctgt |
3225413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 90 - 382
Target Start/End: Complemental strand, 3230953 - 3230661
Alignment:
| Q |
90 |
atcatcaatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcagga |
189 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3230953 |
atcagcaatcatgacaactgcaaatactctcaacctcggcgggatacctatactggatcaaaggcttttgccggctgatattttcgctactggtgcagga |
3230854 |
T |
|
| Q |
190 |
catgttaatcctgttaaagctaatgatcccggtcttgtttatgatattcaaccagaagattatgttccttatctatgtggtttgggttattctgataaag |
289 |
Q |
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|||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3230853 |
catgttaatccttttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatctttgtggtttgggttattctgataaag |
3230754 |
T |
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| Q |
290 |
agattgaagttattgttcagtggaaagtgaagtgttctaatgtgaaaagtataccagaagcacagctgaactatccttctttctctattctgt |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| |
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| T |
3230753 |
agattgaagttattgttcagtggaaagtgaagtgctctaatgtgaaaagtataccagaagctcaattgaattatccttctttttctattctgt |
3230661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 90 - 382
Target Start/End: Complemental strand, 3220720 - 3220428
Alignment:
| Q |
90 |
atcatcaatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcagga |
189 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
3220720 |
atcagcaatcatgacaactgcaaatactctcaacctcggcgggatacctatactggatcaaaggcttttgccggctgatatttttgctactggtgcagga |
3220621 |
T |
|
| Q |
190 |
catgttaatcctgttaaagctaatgatcccggtcttgtttatgatattcaaccagaagattatgttccttatctatgtggtttgggttattctgataaag |
289 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3220620 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgttccttatctgtgtggtttgggttattctgataaag |
3220521 |
T |
|
| Q |
290 |
agattgaagttattgttcagtggaaagtgaagtgttctaatgtgaaaagtataccagaagcacagctgaactatccttctttctctattctgt |
382 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| |
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| T |
3220520 |
agattgaagttattgttcaacggaaagtgaagtgttctaatgtgaaaagtataccagaagctcaattgaattatccttctttttctattctgt |
3220428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 90 - 382
Target Start/End: Original strand, 3179088 - 3179380
Alignment:
| Q |
90 |
atcatcaatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcagga |
189 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |||| || |||||| |||| ||||||||||||||| |
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| T |
3179088 |
atcagcaatcatgacaactgctaatactctcaacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcagga |
3179187 |
T |
|
| Q |
190 |
catgttaatcctgttaaagctaatgatcccggtcttgtttatgatattcaaccagaagattatgttccttatctatgtggtttgggttattctgataaag |
289 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||| |
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| T |
3179188 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattcaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaag |
3179287 |
T |
|
| Q |
290 |
agattgaagttattgttcagtggaaagtgaagtgttctaatgtgaaaagtataccagaagcacagctgaactatccttctttctctattctgt |
382 |
Q |
| |
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|||||||| |||||| ||||||| |||||| || |||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||| |
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| T |
3179288 |
agattgaacttattgctcagtgggtagtgaactgctctaatgtgaaaagtataccagaagctcaactgaattatccttctttttctattctgt |
3179380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 90 - 382
Target Start/End: Complemental strand, 3239752 - 3239460
Alignment:
| Q |
90 |
atcatcaatcatgacaactgcaaatactctcaacctcggcgggatccctatactggatcaaaggctttttccggctgatattttcgctactggtgcagga |
189 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| |||| || |||||| |||| ||||||||||||||| |
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| T |
3239752 |
atcagcaatcatgacaactgctaatactctcaacctcggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcagga |
3239653 |
T |
|
| Q |
190 |
catgttaatcctgttaaagctaatgatcccggtcttgtttatgatattcaaccagaagattatgttccttatctatgtggtttgggttattctgataaag |
289 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||| |
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| T |
3239652 |
catgttaatcctgttaaagctaatgatcctggtcttgtttatgatattcaaccagaagattacgttccttatctgtgtggtttgggttatactgatcaag |
3239553 |
T |
|
| Q |
290 |
agattgaagttattgttcagtggaaagtgaagtgttctaatgtgaaaagtataccagaagcacagctgaactatccttctttctctattctgt |
382 |
Q |
| |
|
|||||||| |||||| ||||||| |||||| || |||||||||||||||||||||||||| || |||| ||||||||||| |||||||||| |
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| T |
3239552 |
agattgaacttattgctcagtgggtagtgaactgctctaatgtgaaaagtataccagaagctcaactgagttatccttctttttctattctgt |
3239460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 286
Target Start/End: Complemental strand, 3201837 - 3201694
Alignment:
| Q |
143 |
tggatcaaaggctttttccggctgatattttcgctactggtgcaggacatgttaatcctgttaaagctaatgatcccggtcttgtttatgatattcaacc |
242 |
Q |
| |
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|||| ||||||||| | || |||||| | || || |||||||| ||||||||||| ||| ||||| || ||||| || ||||||||||||||| || | |
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| T |
3201837 |
tggaccaaaggcttctaccagctgatgtatttgccactggtgctggacatgttaacccttcaaaagcaaacgatccgggacttgtttatgatattgaaac |
3201738 |
T |
|
| Q |
243 |
agaagattatgttccttatctatgtggtttgggttattctgata |
286 |
Q |
| |
|
| | ||||||||||||||| | ||||||||| |||| |||||| |
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|
| T |
3201737 |
aaatgattatgttccttatttgtgtggtttgaattatactgata |
3201694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 178 - 286
Target Start/End: Complemental strand, 3207776 - 3207668
Alignment:
| Q |
178 |
actggtgcaggacatgttaatcctgttaaagctaatgatcccggtcttgtttatgatattcaaccagaagattatgttccttatctatgtggtttgggtt |
277 |
Q |
| |
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|||||||| |||||||| || ||| ||||| |||||||| || ||||||||||||||| || || | ||||||||||||||| | ||||||||| || |
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| T |
3207776 |
actggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgatattgaaacaaatgattatgttccttatttgtgtggtttgaatt |
3207677 |
T |
|
| Q |
278 |
attctgata |
286 |
Q |
| |
|
|| |||||| |
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|
| T |
3207676 |
atactgata |
3207668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 178 - 273
Target Start/End: Complemental strand, 3215712 - 3215617
Alignment:
| Q |
178 |
actggtgcaggacatgttaatcctgttaaagctaatgatcccggtcttgtttatgatattcaaccagaagattatgttccttatctatgtggtttg |
273 |
Q |
| |
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|||||||| |||||||| || ||| ||||| || ||||| || ||||||||||||||| ||||| | |||||||||||||| | ||||||||| |
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| T |
3215712 |
actggtgctggacatgtcaacccttcgaaagcaaacgatccaggacttgtttatgatattgaaccaaatgattatgttccttacttgtgtggtttg |
3215617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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