View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2374_high_7 (Length: 278)
Name: NF2374_high_7
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22897175 - 22896939
Alignment:
| Q |
1 |
ttgtggtagaaggcctattgaaaatgtagcggaaaatgaatgcgtaattttggttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22897175 |
ttgtggtagaaggcctattgaaaatgtagcggaaaatgaatgcgtaattttggttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggca |
22897076 |
T |
|
| Q |
101 |
aaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22897075 |
aaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccag |
22896976 |
T |
|
| Q |
201 |
gtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22896975 |
gtatgagacaagttgtacagtatttggaaagggatat |
22896939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22813933 - 22813697
Alignment:
| Q |
1 |
ttgtggtagaaggcctattgaaaatgtagcggaaaatgaatgcgtaattttggttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggca |
100 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||| | |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |
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|
| T |
22813933 |
ttgtggtagaaggcctatttctaatgttggggaaaatgaaagtgtaattttggttgattgtgtatttgagtgttggaaaagaggtgatattcttgaggca |
22813834 |
T |
|
| Q |
101 |
aaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccag |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22813833 |
aaagatgtaaatttggggacaaattatgtgtctgaagaggttgagttggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccag |
22813734 |
T |
|
| Q |
201 |
gtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
22813733 |
gtatgagacaagttgtgcagtatttggagcgggatat |
22813697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22879543 - 22879307
Alignment:
| Q |
1 |
ttgtggtagaaggcctattgaaaatgtagcggaaaatgaatgcgtaattttggttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggca |
100 |
Q |
| |
|
|||||| ||| ||||||||| ||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
22879543 |
ttgtggaagagggcctattgctaatgtaggggaaaatgaatgtgtaattttggttgatagtgtgtttgagtgttggaaaagaggtgatattcttgaggca |
22879444 |
T |
|
| Q |
101 |
aaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccag |
200 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22879443 |
aaagatgtaaatttggggacagattatgtgtctgaagaggtggaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccag |
22879344 |
T |
|
| Q |
201 |
gtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22879343 |
gtatgagacaagttgtgcagtatttggagagggatat |
22879307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22892859 - 22892623
Alignment:
| Q |
1 |
ttgtggtagaaggcctattgaaaatgtagcggaaaatgaatgcgtaattttggttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggca |
100 |
Q |
| |
|
||||||||||||||||||| ||||| | |||||||||| | |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
22892859 |
ttgtggtagaaggcctatttctaatgttggggaaaatgaaagtgtaattttggttgattgtgtatttgagtgttggaaaagaggtgatattcttgaggca |
22892760 |
T |
|
| Q |
101 |
aaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccag |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22892759 |
aaagatgtaaatttggggacaaactttgtgtctgaagaggtggagttggtgttgaaacttggattgttgtgttcacattcagaacctttggctagaccat |
22892660 |
T |
|
| Q |
201 |
gtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22892659 |
gtatgagacaagttgtgcagtatttggagagggatat |
22892623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22874834 - 22874598
Alignment:
| Q |
1 |
ttgtggtagaaggcctattgaaaatgtagcggaaaatgaatgcgtaattttggttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
22874834 |
ttgtggtagaaggcctattgccaatgtaggggaaaatgaatgtgtaattttggttgattgtgtatttgagtgttggaaaagaggtgatattcttgaggca |
22874735 |
T |
|
| Q |
101 |
aaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccag |
200 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
22874734 |
aaagatgtaaattttgggacaaattatgtgtctgaagaggtggaattggttttgaaacttggattgttgtgttctcattcagagcctttggctagaccaa |
22874635 |
T |
|
| Q |
201 |
gtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
| ||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
22874634 |
gcatgaggcaagttgtgcagtatttggagagggatat |
22874598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 22838906 - 22838722
Alignment:
| Q |
53 |
gttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggcaaaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgt |
152 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||||||| |
|
|
| T |
22838906 |
gttgattgtgtgtttgagtgttggaaaagaggtgatattcttgaggcaaaagatgtaaatttggggacagattatgtgtctgaagaggtggagttggtgt |
22838807 |
T |
|
| Q |
153 |
tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||| |||||||| ||||||||||| | |||||| |
|
|
| T |
22838806 |
tgaaacttggattgttgtgttctcattcagagcctttggctagaccaagtatgaggcaagttgtgcagtatttggagacggatat |
22838722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 22829885 - 22829701
Alignment:
| Q |
53 |
gttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggcaaaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgt |
152 |
Q |
| |
|
||||||| ||| ||||| |||||| |||| ||| | ||||||||||||||||||||||||||||| || | ||||||||||| ||||| || ||||||| |
|
|
| T |
22829885 |
gttgattatgtgtttgaatgttggcaaagaggtgagattcttgaggcaaaagatgtaaatttgggcactgattatgtgtctgaggaggtcgagttggtgt |
22829786 |
T |
|
| Q |
153 |
tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22829785 |
tgaaacttggattgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtgcagtatttggagagggatat |
22829701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 53 - 236
Target Start/End: Complemental strand, 22888152 - 22887969
Alignment:
| Q |
53 |
gttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggcaaaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgt |
152 |
Q |
| |
|
||||||| ||| ||||| |||||| |||| ||| | |||||||||||||||||||| |||| || ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
22888152 |
gttgattctgtgtttgaatgttggcaaagaggtgagattcttgaggcaaaagatgttcatttaggaacaaattatgtgtctgaagaggtggaattggtgt |
22888053 |
T |
|
| Q |
153 |
tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggata |
236 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22888052 |
tgaaacttggcttgttgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtacagtatttggagagggata |
22887969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 22808474 - 22808290
Alignment:
| Q |
53 |
gttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggcaaaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgt |
152 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| ||| | ||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
22808474 |
gttgattatgtgtttgaatgttggaaaagaggtgaaattcttgaggcaaaagatgtatatttaggaacaaattatgtgtctgaagaggttgaattggtgt |
22808375 |
T |
|
| Q |
153 |
tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||| ||| ||||||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22808374 |
tgaaacttggcttgttgtgtttgcattcagagcctctggttagaccaagtatgagacaagttgtgcagtatttggagagggatat |
22808290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 22804178 - 22804008
Alignment:
| Q |
65 |
tttgagtgttggaaaaggggtaatattcttgaggcaaaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgttgaaacttggtt |
164 |
Q |
| |
|
||||| |||| |||||| ||| | ||||||||||| ||||||||| |||| || ||||| ||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
22804178 |
tttgaatgtttgaaaagaggtgaaattcttgaggctaaagatgtatatttaggaacaaattatgtgtctgaagaggtggaattggtgttgaaacttggct |
22804079 |
T |
|
| Q |
165 |
tgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggat |
235 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||||| |
|
|
| T |
22804078 |
tgatgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtgcagtatttggagagggat |
22804008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 22870612 - 22870504
Alignment:
| Q |
129 |
tgtctgaagaggttgaattggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttgga |
228 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
22870612 |
tgtctgaagaggtggaattggtgttgaaacttggcttgatgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtgcagtatttgga |
22870513 |
T |
|
| Q |
229 |
aagggatat |
237 |
Q |
| |
|
|||||||| |
|
|
| T |
22870512 |
gagggatat |
22870504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 235
Target Start/End: Complemental strand, 22912521 - 22912331
Alignment:
| Q |
45 |
taattttggttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggcaaaagatgtaaatttggggacaaactatgtgtctgaagaggttga |
144 |
Q |
| |
|
||||||||||||||| ||| | ||| ||||||||||| ||| | ||| ||||||| |||||||| ||||| || | |||||| |||||| ||||| |
|
|
| T |
22912521 |
taattttggttgattatgtttatgattgttggaaaagaggtgagattattgaggctaaagatgtgaatttaggtgtggattatgtggttgaagaagttga |
22912422 |
T |
|
| Q |
145 |
attggtgttgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggat |
235 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||| | ||||||||| |||||| |
|
|
| T |
22912421 |
attggttttgaaacttggtttgttatgttcacattgtgaggctttggctagaccaagtatgagacaagttttgaggtatttggagagggat |
22912331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 21151860 - 21152044
Alignment:
| Q |
53 |
gttgattgtgtctttgagtgttggaaaaggggtaatattcttgaggcaaaagatgtaaatttggggacaaactatgtgtctgaagaggttgaattggtgt |
152 |
Q |
| |
|
||||||| ||| ||||| ||||||||||| ||| | ||||||||||||||||||| | |||| || ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
21151860 |
gttgattatgtgtttgaatgttggaaaagaggtgaaattcttgaggcaaaagatgcatatttaggaacaaaatatgtgtctgaagaggtggaattggtgt |
21151959 |
T |
|
| Q |
153 |
tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggatat |
237 |
Q |
| |
|
|||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
21151960 |
tgaaacttggcttgttgtgttcacattccgagcctttggctagaccaagtatgaggcaagttgtgcagtatttggagagggatat |
21152044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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