View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2374_high_9 (Length: 271)
Name: NF2374_high_9
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 32983977 - 32984211
Alignment:
| Q |
29 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagccctagtaagaatatatatcactat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32983977 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagccctagtaagaatatatatcactat |
32984076 |
T |
|
| Q |
129 |
ataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctctcat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32984077 |
ataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctctcat |
32984176 |
T |
|
| Q |
229 |
catatacctcacatgtttcttcttctgcctatgat |
263 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32984177 |
catatacctcacatgtttcttcttctgccaatgat |
32984211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 6521074 - 6521314
Alignment:
| Q |
29 |
aaaaattactaaggttacattgctttaaggaaatcaaatcaaattactagtacaatattttacacctactataagc--cctagtaagaatatatatcact |
126 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| |||||||| |||||||||| ||| |||||||||||| |||| ||||| |||||||||| ||| |
|
|
| T |
6521074 |
aaaaattattaaggttaagctgatttaaggaaatgaaatcaaaatactagtacagtatgttacacctactacaagctacctagcaagaatatatt--act |
6521171 |
T |
|
| Q |
127 |
atataagtagcacaagccattctcacattcccataacccaaattcaattttcaaagatgaagatgaatcacattattgttttcttttttgttctcctc-- |
224 |
Q |
| |
|
||||||| |||| |||| | ||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
6521172 |
atataagcagcaaaagctaatctcacatttccataacacagattcaattttcaaagatgaagatgaatcacattattattttcttttttgctctcctcat |
6521271 |
T |
|
| Q |
225 |
----tcatcatatacctcacatgtttcttcttctgcctatgat |
263 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
6521272 |
atcatcatcatacaccttccatgtttcttcttctgccaatgat |
6521314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 2345571 - 2345522
Alignment:
| Q |
189 |
atgaatcacattattgttttcttttttgttctcctctcatcatatacctc |
238 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
2345571 |
atgattcacactattcttttcttttttgttcttctctcatcatatacctc |
2345522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University