View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_10 (Length: 451)
Name: NF2374_low_10
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 46898551 - 46898168
Alignment:
| Q |
1 |
agcagggtgaaaaatgaataaaatagtgatatcgggaacaggcaacagcaaagtaacacttttgaggcggtgactctctacatgttaatttgtacatatc |
100 |
Q |
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| T |
46898551 |
agcagggtgaaaaatgaataaaatagtgatatcgggaacaggcaacagcaaagtaacacttttgaggcggtgactctctacatgttaatttgtacatatc |
46898452 |
T |
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| Q |
101 |
aattcatcatatacataacattgtacagtgaggcaatagtatgtcataatatttatgttttgaatcctatgtatgatattgataagttatttgtagtcaa |
200 |
Q |
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| T |
46898451 |
aattcatcatatatataacattgtacagtgaggcaatagtatgtcataatatttatgttttgaatcctatgtatgatattgataagttatttgtagtcaa |
46898352 |
T |
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| Q |
201 |
ggtgatttgacataggtctagcatgnnnnnnnaaaccaatataatcaagtgtgtttttaggcataatcgaacaaaaacaatgggccgagcatgaacagtg |
300 |
Q |
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| T |
46898351 |
ggtaatttgacataggtctagcatgtttttttaaaccaatataatcaagtgtgtttttaggcgtgatcgaacaaaaacaatgggccgagcatgaacagtg |
46898252 |
T |
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| Q |
301 |
tctgccgatatggatgttgagacgctcaagtcagtatgagagcaaagaagaagaggtatcaagtggaaagagttgtgtaccatg |
384 |
Q |
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| T |
46898251 |
tctgccgatatggatgttgacacgctcaagtcagtatgagagcaaagaggaagaggtatcaagtggaaagagttgtgtaccatg |
46898168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 381
Target Start/End: Complemental strand, 32715284 - 32715228
Alignment:
| Q |
325 |
ctcaagtcagtatgagagcaaagaagaagaggtatcaagtggaaagagttgtgtacc |
381 |
Q |
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| T |
32715284 |
ctcaagttagtatgagagcaaagagtgagaggtatcaagtggaaggaattgtgtacc |
32715228 |
T |
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