View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_11 (Length: 436)
Name: NF2374_low_11
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 92 - 393
Target Start/End: Original strand, 40171575 - 40171877
Alignment:
| Q |
92 |
tgattttagggagaatacatgatattgacaccatactgaagtcaagagcaaatgaatttgaagacattgactgcaatatcaaagacccacagttttgtgc |
191 |
Q |
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| T |
40171575 |
tgattttagggagaatacatgatattgataccatactgaagtcaagagcaaatgaatttgtagacattgaccgcaataccaaagacccacagttttgtgc |
40171674 |
T |
|
| Q |
192 |
atcctttgcccatgaaatctatgaaaatttgcgtgtatcagaggtttgtcgtcttcatttattttaatgttttagtcacttgttgtaattgtcaaagtga |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40171675 |
atcctttgcccatgaaatctatgaaaatttgcgtgtatcagaggtttgtcgtcttcatttattttaatgttttagtcacttgttgtaattgtcaaagtga |
40171774 |
T |
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| Q |
292 |
ttgctagcagagtagcattttgatctattttgatgcttttataggtttac-aatttcttgtttgtgtttggtaccataaattaaccaatgcaatattcat |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40171775 |
ttgctagcagagtagcattttgatctattttgatgcttttataggtttacaaatttcttgtttgtgtttggtaccataaattaaccaatgcaatattcat |
40171874 |
T |
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| Q |
391 |
ctc |
393 |
Q |
| |
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||| |
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| T |
40171875 |
ctc |
40171877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 34899903 - 34899975
Alignment:
| Q |
1 |
gagatgaactaaagagagatgtgcttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
73 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899903 |
gagaagaactaaagagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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