View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_12 (Length: 432)
Name: NF2374_low_12
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 209 - 419
Target Start/End: Complemental strand, 40113388 - 40113178
Alignment:
| Q |
209 |
tttagtaggaaacgtagggcatacaattatagtcacaagtggaatagattccaaatggaaacagatttaaagcatgcacactatggatgggaaacaaatg |
308 |
Q |
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| T |
40113388 |
tttagtaggaaacgtagggcatataattatagtcacaagtggaatagattccaaatggaaacagatttaaagcatgcacactatggatgggaaacaaaag |
40113289 |
T |
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| Q |
309 |
tgtacaagaatgtttgtcccacacaattgagatttgcatacataccagctgttgtgcaacaaaactcaatagttgaagtagttggatccgattcctgtgg |
408 |
Q |
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| T |
40113288 |
tgtacaagaatgtttgtcccacacaattgagatttgcatacataccagctgttgtgcaacaaaactcaatagttgaagtagttggatccgattcctgtgg |
40113189 |
T |
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| Q |
409 |
acaggcaacag |
419 |
Q |
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| T |
40113188 |
acaggcaacag |
40113178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 384776 - 384902
Alignment:
| Q |
89 |
aacctgtgtatgactgagttatgcaagtcagtgagagtgtaaatgtcaaaataatgtggcaaccgtctcaacaagggtatggctaattgagtagtat--- |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
384776 |
aacctgtgtatgactgagttatgcaagtcagtgagagtgtaaatgtcaaaataatgtggcaaccgtctcaacaagggtatggctaattgagta-tatctc |
384874 |
T |
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| Q |
186 |
ctcctgtcttacataaaccaatgtttag |
213 |
Q |
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| T |
384875 |
ctcctgtcttacataaaccaatgattag |
384902 |
T |
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