View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_13 (Length: 431)
Name: NF2374_low_13
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 33432818 - 33432629
Alignment:
| Q |
11 |
caaaggaaagaaaaatcaagggttagaaaaatagttaccttgattgctatggggacattacaacccacttgaatatattgtttttgtagtcatagttata |
110 |
Q |
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| T |
33432818 |
caaaggaaagaaaaatcaagggttagaaaaatagttaccttgattgctatggggacattacaacccacttgaatatattgtttttgtagtcatagttata |
33432719 |
T |
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| Q |
111 |
gtactagtaat-----taaacatgacaattatgaaaatatgtgcaaaactactcatcacaaaagaatgaaaaggaaatatatagtaccat |
195 |
Q |
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| T |
33432718 |
gtactagtaattaaattaaacatgacaattatgaaaatatgtgcaaaactactcatcacaaaagaatgaaaaggaaatatatagtaccat |
33432629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 283
Target Start/End: Complemental strand, 33432572 - 33432542
Alignment:
| Q |
253 |
ttacacttaccataatgtttggttgaaagcc |
283 |
Q |
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| T |
33432572 |
ttacacttaccataatgtttggttgaaagcc |
33432542 |
T |
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