View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_14 (Length: 419)
Name: NF2374_low_14
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 123 - 412
Target Start/End: Complemental strand, 11811924 - 11811635
Alignment:
| Q |
123 |
atgtttttcatcaggtttagaaaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataaga |
222 |
Q |
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| T |
11811924 |
atgtttttcatcaggtttagaaaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataaga |
11811825 |
T |
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| Q |
223 |
aacaacagattcttagaaagttcagtaccaaaacctaaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcnnnnnnnc |
322 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11811824 |
aacaacagattcttagaaagttcagttccaaaaccttaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcaaaaaaac |
11811725 |
T |
|
| Q |
323 |
aaggcctagaaataagagttaggagtggtggacatgactatgaaggtctttcttatgtctctaatgttccattcttaatgattcatctca |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11811724 |
aaggcctagaaataagagttaggagtggtggacatgactatgaaggtctttcttatgtctctaatgttccattcttaatgattgatctca |
11811635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 123 - 413
Target Start/End: Complemental strand, 11804180 - 11803890
Alignment:
| Q |
123 |
atgtttttcatcaggtttagaaaattcaaactcaactacaaaagtaatactcactcaaaacagttcatcttatacacctcttttacaatcttccataaga |
222 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| || |||||| |
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| T |
11804180 |
atgtttttcaccaggtttaaaaaattcaaactcaactacaaaagtaataatcactcaaaacagttcatcttatgcaccccttttacaatcatcaataaga |
11804081 |
T |
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| Q |
223 |
aacaacagattcttagaaagttcagtaccaaaacctaaccttattgttattccaaatgatctattccaaatccaaaaaacaataatttgttcnnnnnnnc |
322 |
Q |
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| T |
11804080 |
aaccaaagattcttagaaaattcggttccaaaacctaacctcattgtttttccaaatgacctatttcaaatccaaacaacaataatttgttcaaaaaaac |
11803981 |
T |
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| Q |
323 |
aaggcctagaaataagagttaggagtggtggacatgactatgaaggtctttcttatgtctctaatgttccattcttaatgattcatctcac |
413 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |
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| T |
11803980 |
aaggcctggaaataagaattaggagtggtggacatgactatgaaggtctttcttatgtctctaatgttccattcctaatcattgatctcac |
11803890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 395
Target Start/End: Original strand, 11917327 - 11917381
Alignment:
| Q |
341 |
ttaggagtggtggacatgactatgaaggtctttcttatgtctctaatgttccatt |
395 |
Q |
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|||| ||||| |||||||||||||||||| ||||||||||||| ||||| ||||| |
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| T |
11917327 |
ttagaagtggaggacatgactatgaaggtgtttcttatgtctcaaatgtaccatt |
11917381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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