View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2374_low_18 (Length: 374)

Name: NF2374_low_18
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2374_low_18
NF2374_low_18
[»] chr7 (5 HSPs)
chr7 (65-362)||(20707494-20707792)
chr7 (65-362)||(20875538-20875836)
chr7 (144-314)||(41595380-41595550)
chr7 (65-128)||(41594671-41594734)
chr7 (203-314)||(31420677-31420788)
[»] chr5 (5 HSPs)
chr5 (144-314)||(23122289-23122459)
chr5 (144-314)||(14008231-14008401)
chr5 (65-128)||(14007522-14007585)
chr5 (203-314)||(22271618-22271729)
chr5 (65-128)||(23123110-23123173)
[»] chr2 (4 HSPs)
chr2 (144-314)||(43523986-43524156)
chr2 (203-314)||(5087406-5087517)
chr2 (65-128)||(43523278-43523341)
chr2 (68-120)||(5086643-5086695)
[»] chr3 (5 HSPs)
chr3 (144-310)||(22510896-22511062)
chr3 (65-126)||(22511700-22511761)
chr3 (203-314)||(2735308-2735419)
chr3 (203-314)||(40924354-40924465)
chr3 (170-314)||(22127789-22127933)
[»] chr4 (2 HSPs)
chr4 (144-314)||(50413725-50413895)
chr4 (203-295)||(14798457-14798549)
[»] chr6 (1 HSPs)
chr6 (203-314)||(95980-96091)
[»] scaffold0005 (1 HSPs)
scaffold0005 (203-295)||(41179-41271)
[»] chr1 (1 HSPs)
chr1 (203-282)||(27132127-27132206)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 65 - 362
Target Start/End: Original strand, 20707494 - 20707792
Alignment:
Q  65 agacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagggtgctgcannnnnnnatatcagatatgttacaaaca 164  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||       |||||||||||||||||||||    
T  20707494 agacggtttcaagacacttggtttagcatatttctttcatggctagaatatttaccttcaacggatgctgcattttttaatatcagatatgttacaaaca 20707593  T
Q  165 ctacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaa 264  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  20707594 ctacatctttaagtcttacggaaccagtgtatgatgtactttcttgacataacattgaagtgtctaaccttcacgatcaagggtatgatggtgcaagcaa 20707693  T
Q  265 tatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtctctaagcatac-acactcannnnnnngctcatatattacaacttgcctt 362  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||    
T  20707694 tatgaaagaagaatggaacaatttacaagcgttgtttatgaaggattgtctctaagcatactacactcatttttttgctcatatattacaacttgcctt 20707792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 65 - 362
Target Start/End: Original strand, 20875538 - 20875836
Alignment:
Q  65 agacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagggtgctgcannnnnnnatatcagatatgttacaaaca 164  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||||       |||||||||||||||||||||    
T  20875538 agacggtttcaagacacttggtttagcatatttctttcatggctagaatatttaccttcaacggatgctgcattttttaatatcagatatgttacaaaca 20875637  T
Q  165 ctacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaa 264  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  20875638 ctacatctttaagtcttacggaaccagtgtatgatgtactttcttgacataacattgaagtgtctaaccttcacgatcaagggtatgatggtgcaagcaa 20875737  T
Q  265 tatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtctctaagcatac-acactcannnnnnngctcatatattacaacttgcctt 362  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||    
T  20875738 tatgaaagaagaatggaacaatttacaagcgttgtttatgaaggattgtctctaagcatactacactcatttttttgctcatatattacaacttgcctt 20875836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 314
Target Start/End: Original strand, 41595380 - 41595550
Alignment:
Q  144 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 243  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| |||||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  41595380 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcagtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 41595479  T
Q  244 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 314  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  41595480 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 41595550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 41594671 - 41594734
Alignment:
Q  65 agacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 128  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  41594671 agacggtttaaagacacttggtttagcttatttcattcatggctagaatattcaccttcaaagg 41594734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 31420677 - 31420788
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 302  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  31420677 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 31420776  T
Q  303 tgaaggattgtc 314  Q
    |||| |||||||    
T  31420777 tgaaagattgtc 31420788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 144 - 314
Target Start/End: Complemental strand, 23122459 - 23122289
Alignment:
Q  144 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 243  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| |||||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  23122459 atatgagatgtgttactagcactacatctttaagtcttaaggaagcagtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 23122360  T
Q  244 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 314  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  23122359 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 23122289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 144 - 314
Target Start/End: Original strand, 14008231 - 14008401
Alignment:
Q  144 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 243  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  14008231 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 14008330  T
Q  244 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 314  Q
    | |||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  14008331 atggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 14008401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 14007522 - 14007585
Alignment:
Q  65 agacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 128  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||||    
T  14007522 agacggtttaaagacacttggtttagcttatttcattcatggctagaatattcaccttcaaagg 14007585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 22271729 - 22271618
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 302  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  22271729 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 22271630  T
Q  303 tgaaggattgtc 314  Q
    |||| |||||||    
T  22271629 tgaaagattgtc 22271618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 23123173 - 23123110
Alignment:
Q  65 agacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 128  Q
    ||||||||| |||||||||||||||||   |||  |||||||||||||||||||||||||||||    
T  23123173 agacggtttaaagacacttggtttagcttgttttattcatggctagaatattcaccttcaaagg 23123110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 144 - 314
Target Start/End: Original strand, 43523986 - 43524156
Alignment:
Q  144 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 243  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||  |||||    
T  43523986 atatgagatgtgttaccagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcgtggtca 43524085  T
Q  244 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 314  Q
    |||||||||||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||||||    
T  43524086 agggtatgatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggattgtc 43524156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 5087406 - 5087517
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 302  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||||||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  5087406 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgatggtgctagcaatatgagaggagaatggaattgtttacaagcacttttta 5087505  T
Q  303 tgaaggattgtc 314  Q
    |||| |||||||    
T  5087506 tgaaagattgtc 5087517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 43523278 - 43523341
Alignment:
Q  65 agacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaagg 128  Q
    ||||||||| |||| |||||||||| |  ||||| |||||||||||||||||||||||||||||    
T  43523278 agacggtttaaagatacttggtttaacttatttcattcatggctagaatattcaccttcaaagg 43523341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 5086643 - 5086695
Alignment:
Q  68 cggtttcaagacacttggtttagcaaatttctttcatggctagaatattcacc 120  Q
    |||||||||||||||||||| |||   |||| |||||||||||||||||||||    
T  5086643 cggtttcaagacacttggttcagcttgtttccttcatggctagaatattcacc 5086695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 144 - 310
Target Start/End: Complemental strand, 22511062 - 22510896
Alignment:
Q  144 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 243  Q
    |||| |||| |||||| | |||||||||||||||||||| |||| | |||| |||| | ||||||||||||||| |||| || ||||||||||| |||||    
T  22511062 atatgagatgtgttactagcactacatctttaagtcttaaggaagcggtgtgtgatatactttctcgacataaccttgatgtttctaaccttcatggtca 22510963  T
Q  244 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggat 310  Q
    ||||||| |||||||||||||||||| |  ||||||||||  |||||||||||||||||||||||||    
T  22510962 agggtataatggtgcaagcaatatgagaggagaatggaacggtttacaagcattgtttatgaaggat 22510896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 22511761 - 22511700
Alignment:
Q  65 agacggtttcaagacacttggtttagcaaatttctttcatggctagaatattcaccttcaaa 126  Q
    ||||||||| |||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  22511761 agacggtttaaagacacttggtttagcttatttcattcatggctagaatattcaccttcaaa 22511700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 2735308 - 2735419
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 302  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  2735308 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 2735407  T
Q  303 tgaaggattgtc 314  Q
    |||| |||||||    
T  2735408 tgaaagattgtc 2735419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 40924354 - 40924465
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 302  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  40924354 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 40924453  T
Q  303 tgaaggattgtc 314  Q
    |||| |||||||    
T  40924454 tgaaagattgtc 40924465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 314
Target Start/End: Complemental strand, 22127933 - 22127789
Alignment:
Q  170 tctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatga 269  Q
    ||||||| ||||| |||| |||| | || | | |||| |||||||||| ||||||| |||||| ||   |||||||||||||| ||||| ||||||||||    
T  22127933 tctttaactcttaaggaagcagtatgtggtatactttttcgacataactttgacgtttctaacatttgtggtcaagggtatgacggtgctagcaatatga 22127834  T
Q  270 aataagaatggaacaatttacaagcattgtttatgaaggattgtc 314  Q
     |  |||||||||   |||||||||| | |||||||| |||||||    
T  22127833 gaggagaatggaatggtttacaagcactatttatgaaagattgtc 22127789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 144 - 314
Target Start/End: Original strand, 50413725 - 50413895
Alignment:
Q  144 atatcagatatgttacaaacactacatctttaagtcttacggaaccagtgtatgatgtcctttctcgacataacattgacgtgtctaaccttcacggtca 243  Q
    |||| |||||||||||||||||||||||||||| ||||| |||| |||||| |||| | |||||||||| |||| |||| ||||||||||||| ||||||    
T  50413725 atatgagatatgttacaaacactacatctttaactcttaaggaagcagtgtgtgatatgctttctcgacgtaaccttgatgtgtctaaccttcgcggtca 50413824  T
Q  244 agggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgtttatgaaggattgtc 314  Q
    ||||| ||||| | ||||||||| || |  |||||||||   || | ||||||||||||| ||||||||||    
T  50413825 agggtgtgatgatacaagcaatacgagaggagaatggaatggttaataagcattgtttattaaggattgtc 50413895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 14798549 - 14798457
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagca 295  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   ||||||||||    
T  14798549 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 14798457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 95980 - 96091
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagcattgttta 302  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   |||||||||| | ||||    
T  95980 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagcacttttta 96079  T
Q  303 tgaaggattgtc 314  Q
    |||| |||||||    
T  96080 tgaaagattgtc 96091  T

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Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 41179 - 41271
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaacaatttacaagca 295  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| ||||| |||||||||| |  |||||||||   ||||||||||    
T  41179 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctagcaatatgagaggagaatggaatggtttacaagca 41271  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 203 - 282
Target Start/End: Original strand, 27132127 - 27132206
Alignment:
Q  203 ctttctcgacataacattgacgtgtctaaccttcacggtcaagggtatgatggtgcaagcaatatgaaataagaatggaa 282  Q
    ||||||||||||||| |||| || |||||| |||  |||||||||||||| |||||  ||||||||| |  |||||||||    
T  27132127 ctttctcgacataaccttgatgtttctaacattcgtggtcaagggtatgacggtgctggcaatatgagaggagaatggaa 27132206  T

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