View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_19 (Length: 367)
Name: NF2374_low_19
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_19 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 28764555 - 28764838
Alignment:
| Q |
1 |
caatctacggcagtcaagggtgattgatgtgttactcagtaaacgacatatggataagggtacgaaacaacgattatcatcatatgagagtacatatgtt |
100 |
Q |
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| T |
28764555 |
caatctacggcagtcaagggtgattgatgtgttactcagtaaacgacatatggataagggtacgaaccaacgattatcatcgtatgagagtacatatgtt |
28764654 |
T |
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| Q |
101 |
agatatgttagtaatagttgcctttttcgt---tgtgattgctgaaggtgtaattcaacgaaggtgggactggagatgagggtgttccaagacttgcaaa |
197 |
Q |
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| T |
28764655 |
ag---------tagtagttgcctttttcgtcgttgtgattgctgaaggtgtaattcaacgaaggtgggaccggagatgagggtgttccaagacttgcaaa |
28764745 |
T |
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| Q |
198 |
cgcactttagttgcataagagatttaacaggaagcaataataagacctgagtgaacaggtcatcatggaggattaacggtgatattattcgac |
290 |
Q |
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| T |
28764746 |
cgcactttagttgcataagagatttaacaggaagcaataataagacctgggtgaacaggtcatcatggaggattaacggtgataatcttcgac |
28764838 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 5437679 - 5437741
Alignment:
| Q |
169 |
ggagatgagggtgttccaagacttgcaaacgcactttagttgcataagagatttaacaggaag |
231 |
Q |
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| T |
5437679 |
ggagatgagggtgttccatgacttgcaaacacacttcatttgcataagatatttaacaggaag |
5437741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 553804 - 553743
Alignment:
| Q |
170 |
gagatgagggtgttccaagacttgcaaacgcactttagttgcataagagatttaacaggaag |
231 |
Q |
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| T |
553804 |
gagatgagggtgttccatgatttgcaaacacacttcattcgcataagatattcaacaggaag |
553743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 18325484 - 18325428
Alignment:
| Q |
175 |
gagggtgttccaagacttgcaaacgcactttagttgcataagagatttaacaggaag |
231 |
Q |
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| T |
18325484 |
gagggtgttccatgatttacaacagcactttagttgcataagagatttcacaggaag |
18325428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 161148 - 161095
Alignment:
| Q |
169 |
ggagatgagggtgttccaagacttgcaaacgcactttagttgcataagagattt |
222 |
Q |
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| T |
161148 |
ggagattagggttttccaagacttgcaaacacacttcatctgcataagagattt |
161095 |
T |
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