View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_1_N (Length: 1019)
Name: NF2374_low_1_N
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_1_N |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 8e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 857 - 1009
Target Start/End: Complemental strand, 9711010 - 9710854
Alignment:
| Q |
857 |
tactaaatacaaaccaactaaataaacgatattctcctatctcttaagtattctacttatgtttcaaccttttaggtcaaaaagagctccacacactaaa |
956 |
Q |
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| T |
9711010 |
tactaaatacaaaccaactaaataaacgatattctcctatctcttaagtattctacttatgtttcaaccttttaggtcaaaaagagctccacacactaaa |
9710911 |
T |
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| Q |
957 |
ggaaaataatatgatgcttg----gcattctccccatccctaagcattctacctatg |
1009 |
Q |
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| T |
9710910 |
ggaaaataatatgatgcttggcatgcattctccccatccctaagcattctacctatg |
9710854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 38824739 - 38824821
Alignment:
| Q |
261 |
aaatatttgtggaatatattttaaatagtttcaagaaattagcaaaatcgtcaacatgggtagtggttcatttgcttgaatac |
343 |
Q |
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| T |
38824739 |
aaatatttatagaatatatattaaatagttttaagaaattagcaaaattatgaacaggtgtagtgattcatttgcttgaatac |
38824821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 430 - 511
Target Start/End: Original strand, 32983915 - 32983996
Alignment:
| Q |
430 |
gaaataatatgcctaatatggtatttatagaaaacttggaggatgcagtggctcccatgagtcttcaaggagatccgccact |
511 |
Q |
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| T |
32983915 |
gaaatgatttgcataatatgatatttatagaaaactttggggatatagtggcttctatgagtctccaaggagatccgccact |
32983996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 414 - 509
Target Start/End: Original strand, 5232460 - 5232555
Alignment:
| Q |
414 |
caaccataaattatgagaaataatatgcctaatatggtatttatagaaaacttggaggatgcagtggctcccatgagtcttcaaggagatccgcca |
509 |
Q |
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| T |
5232460 |
caaccagaaactatgcgaaataatacgcataacatggtatttatagaaaagttagggggtgcagtggctcctatgggtctccaaggagatccgcca |
5232555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 350
Target Start/End: Original strand, 5232317 - 5232407
Alignment:
| Q |
260 |
caaatatttgtggaatatattttaaatagtttcaagaaattagcaaaatcgtcaacatgggtagtggttcatttgcttgaatacaacatgg |
350 |
Q |
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| T |
5232317 |
caaatatttatggaatatatattaaacagtttcaaaacattaacgaaattattaatatgtgtagtggttcatttgcttgaatataacatgg |
5232407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 3463848 - 3463769
Alignment:
| Q |
259 |
tcaaatatttgtggaatatattttaaatagtttcaagaaattagcaaaatcgtcaacatgggtagtggttcatttgcttg |
338 |
Q |
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| T |
3463848 |
tcaaatatttgtggaatatatattaaacagttttaagatattatcaaaattatgaacatgtgtagtggttgagttgcttg |
3463769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 481
Target Start/End: Complemental strand, 48579579 - 48579513
Alignment:
| Q |
414 |
caaccataaattatgagaaataatatgcctaatatggtatttatagaaaacttggaggatgcagtggc |
481 |
Q |
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| T |
48579579 |
caaccataaattatgtaaaataatatgacttacatgatatttatagaaaacttggtgg-tgcagtggc |
48579513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 363 - 449
Target Start/End: Complemental strand, 54286309 - 54286223
Alignment:
| Q |
363 |
gggtcaaacccacacccactagaagattcgaaggttgtatatccattatgacaaccataaattatgagaaataatatgcctaatatg |
449 |
Q |
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| T |
54286309 |
gggtcaaacctacacccactaggagattggaagattgtctatccactccgccaaccataaattatgtgaaataatatgtataatatg |
54286223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 433 - 503
Target Start/End: Complemental strand, 46095773 - 46095703
Alignment:
| Q |
433 |
ataatatgcctaatatggtatttatagaaaacttggaggatgcagtggctcccatgagtcttcaaggagat |
503 |
Q |
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| T |
46095773 |
ataatatgcataatatgataattataggaaacttggggggtgcagtggctcccatgggttttcaagaagat |
46095703 |
T |
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