View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_25 (Length: 337)
Name: NF2374_low_25
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 116 - 302
Target Start/End: Original strand, 7623235 - 7623421
Alignment:
| Q |
116 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaa |
215 |
Q |
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| T |
7623235 |
gttgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaa |
7623334 |
T |
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| Q |
216 |
cccaacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttc |
302 |
Q |
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| T |
7623335 |
cccaacctaacaatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttc |
7623421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 118 - 302
Target Start/End: Original strand, 7636329 - 7636513
Alignment:
| Q |
118 |
tgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacc |
217 |
Q |
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| T |
7636329 |
tgaattatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaatgttttatcaagcctcccaagagttcctttgactctatcaatc |
7636428 |
T |
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| Q |
218 |
caacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttc |
302 |
Q |
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| T |
7636429 |
caacccaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttc |
7636513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 118 - 302
Target Start/End: Original strand, 7629546 - 7629730
Alignment:
| Q |
118 |
tgaattatccatgtggtcatcaatgacttgttggtatatcaaatccaactccttgaactttttatcaagcctcccaagagttcctttgattctatcaacc |
217 |
Q |
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||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||| | |
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| T |
7629546 |
tgaataatccatgtggtcatcaataactctttggtatatcaaatccaactccttgaacgttttatcaagcctcccaagtgttcctttgactctatcaatc |
7629645 |
T |
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| Q |
218 |
caacctaataatggaaaatgatcagaaaagtaaaactcagttaacaaagcctgtgcttcattaagcaaaacttgcaatctacttc |
302 |
Q |
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| T |
7629646 |
caaccaaacaatggaaaattatctgaaaagtaaaattcagccaacaaagcttgagcttcattaagcaaaacttgcaatctacttc |
7629730 |
T |
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