View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_26 (Length: 337)
Name: NF2374_low_26
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_26 |
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| [»] scaffold0427 (1 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 24318001 - 24318125
Alignment:
| Q |
94 |
gaagaatataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaat |
193 |
Q |
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| T |
24318001 |
gaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgggatacctcgaat |
24318100 |
T |
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| Q |
194 |
ttcagcaagaagtagatctaaagcg |
218 |
Q |
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| T |
24318101 |
ttcagcaagaagtagatctaaagcg |
24318125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 24187914 - 24188001
Alignment:
| Q |
116 |
tgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaaga |
203 |
Q |
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| T |
24187914 |
tgatcaaattactaaagaaggtgaaggttactagttcttttgtgaagaagttggaaaaagagccgggataccttgaatttcagcaaga |
24188001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 20550202 - 20550279
Alignment:
| Q |
128 |
taaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaag |
205 |
Q |
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| T |
20550202 |
taaagaatgtgaaggttactagttcttttatggagaagctggagaaagagccaggataccttgaattccagcaagaag |
20550279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 4881 - 4969
Alignment:
| Q |
130 |
aagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaagtagatctaaagcg |
218 |
Q |
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| T |
4881 |
aagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgggatacctcgaattttagcaagaagtagatataaagcg |
4969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 24537448 - 24537333
Alignment:
| Q |
103 |
aatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaag |
202 |
Q |
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||||| |||||| |||||| |||||| |||||||| ||||| ||| || |||||||||||| ||||||||||| | | ||||| ||||||||||||| |
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| T |
24537448 |
aatctagagcaagtgatcactttactcaagaaggtaaaggtgacttcttcttttgtggagaagttggagaaagagccagggtaccttgaatttcagcaag |
24537349 |
T |
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| Q |
203 |
aagtagatctaaagcg |
218 |
Q |
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| T |
24537348 |
aagtagatttaaagcg |
24537333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 26825997 - 26826066
Alignment:
| Q |
93 |
cgaagaatataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggag |
162 |
Q |
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| T |
26825997 |
cgaagaacataatttgaagcaattgataaatttattaaagaaggtgaaggttactagttcttttgtggag |
26826066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 233551 - 233426
Alignment:
| Q |
93 |
cgaagaatataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaa |
192 |
Q |
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||||||| | ||| |||||||| || | |||||| |||||||||| ||||||||||||| |||||||||||| |||| ||||||| | | ||||||||| |
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| T |
233551 |
cgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtacctcgaa |
233452 |
T |
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| Q |
193 |
tttcagcaagaagtagatctaaagcg |
218 |
Q |
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| T |
233451 |
ttccatcatgaagtagagctgaagcg |
233426 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 16230834 - 16230896
Alignment:
| Q |
124 |
ttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatac |
186 |
Q |
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| T |
16230834 |
ttactaaagaaggtgaaggttactagttcttttgtagaaaagctggagaaagagccatgatac |
16230896 |
T |
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