View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_29 (Length: 323)
Name: NF2374_low_29
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 38295851 - 38295708
Alignment:
| Q |
103 |
agaaggttgttcataatgtcactactcactcgacacaaatcaactataatatggttaattatatatcttctcgaccaatgatttttcaattgatcatatt |
202 |
Q |
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| T |
38295851 |
agaaggttgttcataatgtcactactcactcgatacaaatcaactataatatggttaattatatatcttctcgaccaatgatttttcaattgatcatatt |
38295752 |
T |
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| Q |
203 |
cattagttgttgtttttgtcttggtatagccattgtctgtggtg |
246 |
Q |
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| T |
38295751 |
cattagttgttgtttttgtcttggtatagccattgactgtggtg |
38295708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 246
Target Start/End: Complemental strand, 38303129 - 38302996
Alignment:
| Q |
105 |
aaggttgttcataatgtcactactcactcgacacaaatcaactataatatggttaattatatatcttctcgaccaatgatttttcaattgatcatattca |
204 |
Q |
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| T |
38303129 |
aaggttgatcataatgtcactactcactccacacaaatcaactataatttggtta--------tctcttcgaccaatgattttccatttgatcatattca |
38303038 |
T |
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| Q |
205 |
ttagttgttgtttttgtcttggtatagccattgtctgtggtg |
246 |
Q |
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| T |
38303037 |
ttggttattgtttttgtcttggtatagccattgactgtggtg |
38302996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 38307342 - 38307293
Alignment:
| Q |
105 |
aaggttgttcataatgtcact--actcactcgacacaaatcaactataat |
152 |
Q |
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| T |
38307342 |
aaggttgttcataatgtcacacaactcactcaacacaaatcaactataat |
38307293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 38307260 - 38307207
Alignment:
| Q |
193 |
tgatcatattcattagttgttgtttttgtcttggtatagccattgtctgtggtg |
246 |
Q |
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| T |
38307260 |
tgatcatattctttggttattgtttttgtcttggtagagccattgattgtggtg |
38307207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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