View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_3 (Length: 555)
Name: NF2374_low_3
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 81 - 310
Target Start/End: Original strand, 3464788 - 3465018
Alignment:
| Q |
81 |
actatattagtcgcatcacaatttgaaacctcggtaaagagatatacaaaattattcatacacccttt-gaaaacaatgacaaaagataaacagaaagat |
179 |
Q |
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| T |
3464788 |
actatattagtcacatcacaatttgaaacctcggtaaagagatatacaaaattattcatacacccttttgaaaacaatgacaaaagataaacagaaagat |
3464887 |
T |
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| Q |
180 |
tcaagaacaaaatgtgatacctaatgaatctgaacatgtagtagcagattagtgctctagaattgaaagagaagaaacaagcacaatccagggctccaaa |
279 |
Q |
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| T |
3464888 |
tcaagaagaaaatgtgatacctaatgaatctgaacatgtagtagcagattagtgctctagaattgaaagagaagaaacaagcacaatccagggctccaaa |
3464987 |
T |
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| Q |
280 |
aagaattgaggaggccccagagaaaggcagt |
310 |
Q |
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| T |
3464988 |
aagaattgaggaggccccagagaaaggcagt |
3465018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 379 - 547
Target Start/End: Original strand, 3465087 - 3465255
Alignment:
| Q |
379 |
aggtaggttggtaagagtgagnnnnnnntggaaatgggattggcagatatggttggctatatttagaggcaatgatgatctcacttccaatcaatttttc |
478 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3465087 |
aggtaggttggtaagagagagaaaaaaatggaaatgggattggcagatatggttggctatatttagaggcaatgatgatctcacttccaatcaatttttc |
3465186 |
T |
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| Q |
479 |
tctatatttggacaaaacagaaaccgttatcataggaaatggttctttttgttttgtctatttcttttc |
547 |
Q |
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| T |
3465187 |
tctatatttggacaaaacagaaaccgttatcataggaaatggttctttttgttttgtctatttcttttc |
3465255 |
T |
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