View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_31 (Length: 321)
Name: NF2374_low_31
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_31 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 13391999 - 13392078
Alignment:
| Q |
242 |
tgttcatagtagtactattctaactttttaatacgtttgttagataatcatatttgttaggggaaaaaagtagtgcaaat |
321 |
Q |
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| T |
13391999 |
tgttcatagtagtactattctaactttttaataattttgttagataatcatatttgttaggggaaaaaagtagtgcaaat |
13392078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 102 - 241
Target Start/End: Original strand, 13391819 - 13391961
Alignment:
| Q |
102 |
aaagaatcaaagttgagacttcgaaa------gtaacacactttaaagtctcaaggcaacaccaccaaaacaagctaagtaggttaatattcttgaagaa |
195 |
Q |
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| T |
13391819 |
aaagaatcaaagttgagactttgaaatcgaaggtaacgcactttaaagtcttaagataacattaccagaacaagttaagtaggttaatttt---gaaaaa |
13391915 |
T |
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| Q |
196 |
atttacgttaaattccaacacaagcctctcttgctagctcaaaata |
241 |
Q |
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| T |
13391916 |
atttacgttaaattccaacacaagcctctcttgctagctctaaata |
13391961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 29511 - 29592
Alignment:
| Q |
104 |
agaatcaaagttgagacttcgaaagtaacacactttaaagtctcaaggcaacaccaccaaaacaagctaagtaggttaatat |
185 |
Q |
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| T |
29511 |
agaatcaaacatgagactttgagagaaacacactccaaagtctcaagcgaacaccaccataccaacctaagtagattaatat |
29592 |
T |
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