View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_33 (Length: 318)
Name: NF2374_low_33
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 85 - 307
Target Start/End: Original strand, 26126486 - 26126708
Alignment:
| Q |
85 |
cgttcctcactgtcttgaaaagaactttactattcataaaaagatacatatccattgttcttttagcagcatgaagcccgtcataaccaggatgtgacgg |
184 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26126486 |
cgttcctcactgtcttgaaaagaactttactattcataaaaagatatatatccatagttcttttagcagcatgaagcccgtcataaccaggatgcgacgg |
26126585 |
T |
|
| Q |
185 |
ataaaagagttcctcattgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttggc |
284 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126586 |
ataaaagagttcctcgttgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttggt |
26126685 |
T |
|
| Q |
285 |
ctgatatagaagaaaccagaatt |
307 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
26126686 |
ctgatatagaagaaaccagaatt |
26126708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 85 - 307
Target Start/End: Original strand, 26084267 - 26084489
Alignment:
| Q |
85 |
cgttcctcactgtcttgaaaagaactttactattcataaaaagatacatatccattgttcttttagcagcatgaagcccgtcataaccaggatgtgacgg |
184 |
Q |
| |
|
|||||||||||||| ||||||||||| | || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
26084267 |
cgttcctcactgtcctgaaaagaactctgctgttcataaaaagatatatatccatagttcttttagcagcatgaagcccgtcataaccaggatgtgatgg |
26084366 |
T |
|
| Q |
185 |
ataaaagagttcctcattgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttggc |
284 |
Q |
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|| |||||||||||| ||||||||| |||||||||||||||| | || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26084367 |
atgaaagagttcctcgttgaaaacggcttggtcccatgcattacccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggt |
26084466 |
T |
|
| Q |
285 |
ctgatatagaagaaaccagaatt |
307 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
26084467 |
ctgatatagaagaaaccagaatt |
26084489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 85 - 307
Target Start/End: Original strand, 26096542 - 26096764
Alignment:
| Q |
85 |
cgttcctcactgtcttgaaaagaactttactattcataaaaagatacatatccattgttcttttagcagcatgaagcccgtcataaccaggatgtgacgg |
184 |
Q |
| |
|
|||||||||||||| ||||||||||| | || |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
26096542 |
cgttcctcactgtcctgaaaagaactctgctgttcataaaaagatatatatccatagttcttttagaagcatgaagcccgtcataaccaggatgcgacgg |
26096641 |
T |
|
| Q |
185 |
ataaaagagttcctcattgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttggc |
284 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
26096642 |
ataaaagagttcctcgttgaaaacgacttggtcccatgctttctccttcgaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggt |
26096741 |
T |
|
| Q |
285 |
ctgatatagaagaaaccagaatt |
307 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
26096742 |
ctgatatagaagaaaccacaatt |
26096764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 86 - 303
Target Start/End: Original strand, 26119830 - 26120047
Alignment:
| Q |
86 |
gttcctcactgtcttgaaaagaactttactattcataaaaagatacatatccattgttcttttagcagcatgaagcccgtcataaccaggatgtgacgga |
185 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| ||| |
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|
| T |
26119830 |
gttcctcactgtcttgaaaagaactctgctattcataaaaagatatatatccatagttcttttagcagcatgaagcccgtcataaccaggatatgatgga |
26119929 |
T |
|
| Q |
186 |
taaaagagttcctcattgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttggcc |
285 |
Q |
| |
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| |||||||||||| ||||||||| ||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
26119930 |
tgaaagagttcctcgttgaaaacgacttggtcccatgctttctccttcaaaagtcgtgctgccacacggtccaaaagctcaattgaaggaatggttggtc |
26120029 |
T |
|
| Q |
286 |
tgatatagaagaaaccag |
303 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
26120030 |
tgatatagaagaaaccag |
26120047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 85 - 307
Target Start/End: Original strand, 26064542 - 26064764
Alignment:
| Q |
85 |
cgttcctcactgtcttgaaaagaactttactattcataaaaagatacatatccattgttcttttagcagcatgaagcccgtcataaccaggatgtgacgg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || || |
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|
| T |
26064542 |
cgttcctcactgtcttgaaaagaactttactattcataaaaaggtacatatccatagtccttttagcagcatgaagcccgtcataaccaggatgcgatgg |
26064641 |
T |
|
| Q |
185 |
ataaaagagttcctcattgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttggc |
284 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||||| ||||| || ||||| | ||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
26064642 |
ataaaagagttcctcgttaaaaacggcttggtcccatgctttctccttggaaagccttgccgccacacgatccaaaagctcaattgaaggaatggttggt |
26064741 |
T |
|
| Q |
285 |
ctgatatagaagaaaccagaatt |
307 |
Q |
| |
|
|| |||||||||||||||||||| |
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|
| T |
26064742 |
ctaatatagaagaaaccagaatt |
26064764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 85 - 307
Target Start/End: Original strand, 26035894 - 26036116
Alignment:
| Q |
85 |
cgttcctcactgtcttgaaaagaactttactattcataaaaagatacatatccattgttcttttagcagcatgaagcccgtcataaccaggatgtgacgg |
184 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||| |||||||||||||||| ||||||||||| |||||||| |
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|
| T |
26035894 |
cgttcctcactgtcttgaaaagaactttgctgttcataaagagatacatatccatagttcttctagcagcatgaagcccttcataaccagggtgtgacgg |
26035993 |
T |
|
| Q |
185 |
ataaaagagttcctcattgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaatggttggc |
284 |
Q |
| |
|
|||||| |||||||| ||||||||| |||||||||||||| ||| || ||||| |||| || ||||||||||||||||||||||||||||||||||| |
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|
| T |
26035994 |
ataaaatagttcctcgttgaaaacggcttggtcccatgcaacctccttggaaagccgtgtcgcgacacggtccaaaagctcaattgaaggaatggttggt |
26036093 |
T |
|
| Q |
285 |
ctgatatagaagaaaccagaatt |
307 |
Q |
| |
|
||||||||||||||||| ||||| |
|
|
| T |
26036094 |
ctgatatagaagaaaccggaatt |
26036116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 90 - 276
Target Start/End: Original strand, 6773220 - 6773406
Alignment:
| Q |
90 |
ctcactgtcttgaaaagaactttactattcataaaaagatacatatccattgttcttttagcagcatgaagcccgtcataaccaggatgtgacggataaa |
189 |
Q |
| |
|
||||| ||||| || ||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||| || ||||||||||||||||| || |||| |
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|
| T |
6773220 |
ctcacagtcttaaacagaaccttactgttcataaaaaggtacatatccattgttctctttgcagcatgaagtccatcataaccaggatgtgaagggtaaa |
6773319 |
T |
|
| Q |
190 |
agagttcctcattgaaaacgccttggtcccatgcattctcttttgaaagtcgtgcagccacacggtccaaaagctcaattgaaggaa |
276 |
Q |
| |
|
| ||||| ||||| ||||| |||| |||||||| |||||||| ||||| || | || || || |||||||||||||||||||||| |
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|
| T |
6773320 |
aaagttcttcattaaaaactgcttgatcccatgctttctctttagaaagccggtccgcaacgcgatccaaaagctcaattgaaggaa |
6773406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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