View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_35 (Length: 316)
Name: NF2374_low_35
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_35 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 47390864 - 47390641
Alignment:
| Q |
93 |
agtttacggcttgaaacaagtgggagtttgtgtcctgggccaagccaattcccaaacacggattatttccagtctcacccaaagaaaattacatgtttca |
192 |
Q |
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| T |
47390864 |
agtttacagcttgaaacaagtgggagtttgtgtcctgggccaagccaattcccaaacagggattatttccagtctcacccaaagaaaattacatgtttca |
47390765 |
T |
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| Q |
193 |
taatcagacatcgacatggcctagactagtgtgacacagtttgctattgtcacattgaaattgatcgttttgtcataaagggattctcagtaattaaatg |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47390764 |
taatcagacatcgacatggcctagactagtgtgacactgtttgctattgtcatattgaaattgatcgttttgtcataaagggattctcagtaattaaatg |
47390665 |
T |
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| Q |
293 |
catatctaactgggagagattaat |
316 |
Q |
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|||||||||||||||||||||||| |
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| T |
47390664 |
catatctaactgggagagattaat |
47390641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 93 - 266
Target Start/End: Original strand, 40625257 - 40625432
Alignment:
| Q |
93 |
agtttacggcttgaaacaagtgggagtttgtgtcctgggccaagccaattcccaaacacggattatttcca--gtctcacccaaagaaaattacatgttt |
190 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||| |
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| T |
40625257 |
agtttatggcttgaaacaagtgggagtttgtgtccttggccaagccaattcccaaacaggaattagttccacagtctcacccaaagaaaattacatgttt |
40625356 |
T |
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| Q |
191 |
cataatcagacatcgacatggcctagactagtgtgacacagtttgctattgtcacattgaaattgatcgttttgtc |
266 |
Q |
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| T |
40625357 |
caaaatcagatatcaacatggcctagactagtgtgacacagtttgctattgtcacattgaaattgatctttttgtc |
40625432 |
T |
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