View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_39 (Length: 313)
Name: NF2374_low_39
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_39 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 92 - 313
Target Start/End: Complemental strand, 238506 - 238285
Alignment:
| Q |
92 |
taaattttggagaatcttacaacttcgtttttaggcctggtaccgtagttgaatctaccttatacttttgtggatttagatttaatactgaatttcacta |
191 |
Q |
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| T |
238506 |
taaattttggagaatcttacaacttcgtttttaggcctggtaccgtagttgaatctaccttatacttttgtggatttagatttaatactgaattttactt |
238407 |
T |
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| Q |
192 |
ctttgacgtttacgatcaaaaacgagatgannnnnnngtcggaaaagattgtcactgggaagtacatgaatcagggccatgtaggcttgatgttctggat |
291 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
238406 |
ctttgacgtttacgatcaaaaacgagatgatttttttgtcggaaaagattgtcactgggaagtacatgaatcagggccatgtaggcttaatgttctggat |
238307 |
T |
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| Q |
292 |
aagccaaactcaatagaatgct |
313 |
Q |
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|||||||||||||||||||||| |
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| T |
238306 |
aagccaaactcaatagaatgct |
238285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 92 - 313
Target Start/End: Original strand, 228394 - 228615
Alignment:
| Q |
92 |
taaattttggagaatcttacaacttcgtttttaggcctggtaccgtagttgaatctaccttatacttttgtggatttagatttaatactgaatttcacta |
191 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
228394 |
taaattttggagaatcttacaactttgtttttaggcctggtaccatagttgaatctaccttatacttttgtggatttagatttaatactgaattttacat |
228493 |
T |
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| Q |
192 |
ctttgacgtttacgatcaaaaacgagatgannnnnnngtcggaaaagattgtcactgggaagtacatgaatcagggccatgtaggcttgatgttctggat |
291 |
Q |
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| T |
228494 |
ctttgacgtttacgatcaaaaacgagatgatttttttgtcggaaaagattgtcgctgggaagtacatgaatcagggccatgtaggcataatgttgtggat |
228593 |
T |
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| Q |
292 |
aagccaaactcaatagaatgct |
313 |
Q |
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| T |
228594 |
aagccaaactcaatagaatgct |
228615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 251212 - 251152
Alignment:
| Q |
151 |
ttatacttttgtggatttagatttaatactgaatttcactactttgacgtttacgatcaaa |
211 |
Q |
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||||| ||||||||||||| ||||| || |||||||||| |||||| ||||| ||||||| |
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| T |
251212 |
ttatatttttgtggatttacatttagtaatgaatttcaccactttgtggtttatgatcaaa |
251152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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