View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2374_low_4 (Length: 505)
Name: NF2374_low_4
Description: NF2374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2374_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 94 - 495
Target Start/End: Complemental strand, 5570516 - 5570115
Alignment:
| Q |
94 |
accacgaaatggcaggcacgcgaaaatccccttggtaatggttcctcgttcgcttttgagaagtcaatggttaactctgaaattacggcaacagtcgcag |
193 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5570516 |
accacgaaatggcaggcacgcaaaaatccccttggcaatggttcctcattcgcttttgagaagtcaatggttaactctgaaattacggcaacagtcgcaa |
5570417 |
T |
|
| Q |
194 |
cttcacattctgatgcgcctactcatgatgttattgccaatacttttagctttgcaaaatatttcggatgcaattcaacagggtttgttgcctcaacctg |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5570416 |
cttcacattctgatgcgcctactcatgatgttattgccaatacttttagctttgcaaaatatttcggacgcaattcaacagggtttgttgcctcaacctg |
5570317 |
T |
|
| Q |
294 |
cctctcccgtgttggaattatctactgtagttgcgcacgatgatgtgcattcacttagagtcgagcaaacgcatccggatgatcaagacatgagtgttcc |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5570316 |
cctctcccgtgttggaattatctactgtagttgcgcacgatgacgtgcattcacttagagtcgagcaaacacatccggatgatcaagacatgagtgttcc |
5570217 |
T |
|
| Q |
394 |
tacttctccagctgctgctgatccggttccatctattgtagagcacgttgacgtgcatgaggatattgtttccgccacgtaagtgagtaatttgttggtt |
493 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5570216 |
tacttctccagctgctgctgatccggttccatctattgtagagcacgttgacgtgcatgaggatattgtttccgccacggaagtgagtaatttgttggtt |
5570117 |
T |
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| Q |
494 |
ca |
495 |
Q |
| |
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|| |
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| T |
5570116 |
ca |
5570115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 116 - 495
Target Start/End: Complemental strand, 25276112 - 25275731
Alignment:
| Q |
116 |
aaaatccccttggtaatggttcctcgttcgcttttgagaagtcaatggttaactctgaaattacggcaacagtcgcagcttcacattctgatgcgcctac |
215 |
Q |
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||||||||||||||| || ||||||| |||||||| | |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
25276112 |
aaaatccccttggtattgattcctcgctcgctttttacaagtca-tggttaactctgaaattacggcaacagttgcagcttaacattctgatgcgcctac |
25276014 |
T |
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| Q |
216 |
tcatgatgttattgccaatacttttagctttgca-----aaatatttcggatgcaattcaacagggtttgttgcctcaacctgcctctcccgtgttggaa |
310 |
Q |
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||||||||||| |||||||||||||||||||||| |||| |||| || |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25276013 |
tcatgatgttactgccaatacttttagctttgcattgcaaaatgtttcagacgcaattcaacagggtttgtttcctcaacctgcctctcccgtgttggaa |
25275914 |
T |
|
| Q |
311 |
ttatctactgtagttgcgcacgatgatgtgcattcacttagagtcgagcaaacgcatccggatgatcaagacatgagtgttcctacttctccagctgctg |
410 |
Q |
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||| |||||||||| || || |||| |||||||||||| ||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||||| |
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| T |
25275913 |
ttagctactgtagtggctcataatgacgtgcattcacttggagtcgagcaaacacatccagatgatcagaacatgagcgttcctacttctccagctgcta |
25275814 |
T |
|
| Q |
411 |
ctgatccggttccatctattgtagagcacgttgacgtgcatgaggatattgtttccgcca-cgtaagtgagtaatttgttggttca |
495 |
Q |
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| || ||||||||||||| ||||||| ||||||||||||||||||||| |||| |||| || ||||||||||||||| |||||| |
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| T |
25275813 |
c---tctggttccatctattatagagcatgttgacgtgcatgaggatattttttcggccaccggaagtgagtaatttgtcggttca |
25275731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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